Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0084 ATGGCAAAACGTTCTCATGTGCCGAAATTTGGCAATTGGGAAAGCGAAGACGTTCCTTATACAGCTTATTTTGACAAGGCCCGACAAGGTAGAACTGGAACAAAGATGATAAATCCAAATGACCCTGAGGAAAATCCAGATTTATCTATTGATTCAGAGGATCTATCTTCGAAGGGATCAGTGAGATCCACGAACGAGTTACATAAGATCAAGGAAGACAGTGATCCTAAGAATTTTACTGATTCTTCAGCTCGTCATTACAATGCAGGCAATAAGAGTGGTGGTCATGGAAGCTATGGAGTAGGTTCTGTTGATAACCAAAGAAGACCTTCGAGACAAAGTACTGGTTCTGAATACGGCGTTGAACGCTCTCCCCTGCATCGCCAGGCTAAAACCCCAGGCAGAGATAGTCCCTCATCGGAAGGAAAGAATTCATATGACAGCAGCCATGGTACACCAGGAAGATCCCGATTAAAACCGGTCGTCGATTATTCATTACGTCACTCGTCTGTATCTCTTCGAAAGAAAAAAGTATTGGACCTCTCCGGTACCGAGAGGATCCACACTCCCCCTTTTGTTACTCCTGACAAAGGTGCAGCTGTTCCGAAATTCGGCGAATGGGATGTGAATAACCCGGCATCGGCCGATGGATTTACTCATATTTTTAACCAAGTGAGAGAGGAGAGACAAGGTGGAGCCGGAAACCATCCAGGCACATATAATGAGAGACCACATGCTATCCGGAAACAACCTACCGACGACAAATCTCAGCTTGAGTTCGACTCGATTAAAGTTCGTGAACTGTTTGGTTCAGTTCGAATTGGTTCATTTGGACAACTCAAATAA 846 0.4456 MAKRSHVPKFGNWESEDVPYTAYFDKARQGRTGTKMINPNDPEENPDLSIDSEDLSSKGSVRSTNELHKIKEDSDPKNFTDSSARHYNAGNKSGGHGSYGVGSVDNQRRPSRQSTGSEYGVERSPLHRQAKTPGRDSPSSEGKNSYDSSHGTPGRSRLKPVVDYSLRHSSVSLRKKKVLDLSGTERIHTPPFVTPDKGAAVPKFGEWDVNNPASADGFTHIFNQVREERQGGAGNHPGTYNERPHAIRKQPTDDKSQLEFDSIKVRELFGSVRIGSFGQLK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0084 281 MobiDBLite consensus disorder prediction 64 80 - -
Lal19g0084 281 MobiDBLite consensus disorder prediction 133 152 - -
Lal19g0084 281 MobiDBLite consensus disorder prediction 27 163 - -
Lal19g0084 281 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 195 230 IPR008700 -
Lal19g0084 281 MobiDBLite consensus disorder prediction 1 20 - -
Lal19g0084 281 MobiDBLite consensus disorder prediction 229 256 - -
Lal19g0084 281 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 194 257 - -
Lal19g0084 281 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 1 161 - -
Lal19g0084 281 MobiDBLite consensus disorder prediction 104 120 - -
Lal19g0084 281 MobiDBLite consensus disorder prediction 242 256 - -
Lal19g0084 281 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 161 IPR040387 -
Lal19g0084 281 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 194 257 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0084 Lal-Chr19 646760 650880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0084 K13456 - gmx:100808509 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1759 2 19926323 19927075 Lal19g0084 19 646760 650880 PCT
Lal9g1547 9 17817069 17820321 Lal19g0084 19 646760 650880 PCT
Lal1g2147 1 23526858 23529082 Lal19g0084 19 646760 650880 PCT
Lal19g0084 19 646760 650880 Lal2g1759 2 19926323 19927075 PCT
Lal19g0084 19 646760 650880 Lal9g1547 9 17817069 17820321 PCT
Lal19g0084 19 646760 650880 Lal1g2147 1 23526858 23529082 PCT