Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1400 ATGGTTTCAGTTGATATTGGGGATTACAAAAAAGAAATCGAGGAATCTAATGGAAGCAAAGTACCGGAGTTTGCTTCTGTAAATATTTCGACTTCGAGAAAAACATTACTGAGTAGTGAAAATCCTCAGGGAAACATGAGCCCTATTCTTAATAGGATCAAGTTCCTTAAATTTGGGTCTGCATCTGCAAAGTTCAAGCGCCTTGTTACTGAGAAGGACCAGATTTCACAGTTGGTCCCTTCTAGTGCTTCATTAAGAGAGCGCTTAGCTATGAAACTTAACTGGGTTTCGCTCAAGAAGTTGTGCATAGAATGGATTAGGGACCCAATGAACATGGCCCTTTTTGCTTGGATCTTATGTGTCGCTGTTTCAGGTGCAATTCTGTTCCTTGTCATGACTGGCATGTTGAACGCTGTGCTGCCACATAAGTCCACGAGGAATGCGTGGTTTGAAGTAAACAACCAAATACTCAATGCACTGTTTACCCTTATGTGTTTGTACCAGCATCCTCAGAGGATCTACCACCTAGTACTTTTGTCCAGATGGAATCCAGAAGATATCTCTAGACTTAGAAAGGTATACTGCAAGAATGGAACATATAAGCCACATGAGTGGGCACACATGATGGTTGTAGTTATTCTCCTTAATGTGAATTGTTTTGCTCAATATGCACTCTGTGGTCTAAACTGGGGTTATAAAAGATCTGAACGCCCTTCCATAGGAGTTGGAATATGCATAGCTTTTGCAATTGGTGCACCTGCCGTGGCAGGTTTATATACCATCATTAGCCCTCTTGGTAAAGATTATGATTCTGATATGGATGAAGAAGCACAGGTTCAAATTTCCGAGGCTCGAAAGAAAGAGCAGCTGAGGGGGAAATCATTTGAGAGGAGATATTCCTTTGCACTTAGAGATCAACAAAGGGTTGTTGAAAGTAGACCACAGTGGAGTGGAGGAATACTTGATATTTGGGATGATATTTCTGAAGCATACCTATCACTTTTCTGTACTTTTTGTGTGTTTGGTTGGAACATGGAGAGACTTGGGTTTGGAAACATGTATGTTCATATTGCCACTTTTATGCTATTCTGCACGGCTCCGTTTTGGATTTTTATATTGGCTGCTGTTAGTATCGAGGATGACACGGTTAGGCAGGCTCTAATAGGTGTTGGGGTTATCTTGTGTTTCTTTGGTTCACTGTATGGTGGCTTTTGGAGGATCCAGATGAGAAAGAGGTACAATTTGCCTGCTTATAATTTCTGTTTCGGTAAACCTGCAGCTTCTGATTGCACACTTTGGCTCTGTTGTTGCTGGTGCTCTCTTGCCCAAGAAGCAAGGACTGGGAATAACTATGAAATCATAGAAGACAAATTTTTCAGGAAAGAAAATGATACTATTGGTGACAAACTACCAATTTCACCTTTGCCTCGCGAAGATGTTGCATCAAACAAATCTGGCTCAAGTTCTCCTTCTATGATAAAACCATCTAGTCCTCTAAGTTCAAGGGGATATTACAGTCCAGGTACGCCGCTATCTACTGTCAAAGAAGATAATTCAGAAAGAGGAGAAGATGGAATAATGAAGCCACCAACTCCGCCATTAATACACAGAGAATCTCTGTAG 1623 0.4116 MVSVDIGDYKKEIEESNGSKVPEFASVNISTSRKTLLSSENPQGNMSPILNRIKFLKFGSASAKFKRLVTEKDQISQLVPSSASLRERLAMKLNWVSLKKLCIEWIRDPMNMALFAWILCVAVSGAILFLVMTGMLNAVLPHKSTRNAWFEVNNQILNALFTLMCLYQHPQRIYHLVLLSRWNPEDISRLRKVYCKNGTYKPHEWAHMMVVVILLNVNCFAQYALCGLNWGYKRSERPSIGVGICIAFAIGAPAVAGLYTIISPLGKDYDSDMDEEAQVQISEARKKEQLRGKSFERRYSFALRDQQRVVESRPQWSGGILDIWDDISEAYLSLFCTFCVFGWNMERLGFGNMYVHIATFMLFCTAPFWIFILAAVSIEDDTVRQALIGVGVILCFFGSLYGGFWRIQMRKRYNLPAYNFCFGKPAASDCTLWLCCCWCSLAQEARTGNNYEIIEDKFFRKENDTIGDKLPISPLPREDVASNKSGSSSPSMIKPSSPLSSRGYYSPGTPLSTVKEDNSERGEDGIMKPPTPPLIHRESL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1400 540 Pfam PLAC8 family 316 446 IPR006461 -
Lal18g1400 540 Pfam Protein of unknown function (DUF2985) 104 182 IPR021369 -
Lal18g1400 540 MobiDBLite consensus disorder prediction 469 540 - -
Lal18g1400 540 MobiDBLite consensus disorder prediction 480 515 - -
Lal18g1400 540 PANTHER PLAC8 FAMILY PROTEIN-RELATED 1 536 - -
Lal18g1400 540 PANTHER PLAC8 FAMILY PROTEIN-RELATED 1 536 - -
Lal18g1400 540 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 315 447 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1400 Lal-Chr18 16223248 16225865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1400 - - gmx:100795088 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0213 6 1432415 1434067 Lal18g1400 18 16223248 16225865 ECH
Lal18g1400 18 16223248 16225865 Lal18g1400 18 16223248 16225865 ECH
Lal21g1272 21 15951943 15954271 Lal18g1400 18 16223248 16225865 LSH
Lal18g1400 18 16223248 16225865 Lal22g0203 22 1264393 1266045 LSH
Lal18g1400 18 16223248 16225865 Lal6g0213 6 1432415 1434067 LSH
Lal21g1272 21 15951943 15954271 Lal18g1400 18 16223248 16225865 PCT
Lal18g1400 18 16223248 16225865 Lal18g1400 18 16223248 16225865 PCT
Lal18g1400 18 16223248 16225865 Lal22g0203 22 1264393 1266045 PCT
Lal18g1400 18 16223248 16225865 Lal6g0213 6 1432415 1434067 PCT
Lal18g1400 18 16223248 16225865 Lal21g1272 21 15951943 15954271 PCT
Lal22g0203 22 1264393 1266045 Lal18g1400 18 16223248 16225865 PCT
Lal6g0213 6 1432415 1434067 Lal18g1400 18 16223248 16225865 PCT