Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0609 ATGGAAGAAGGTGATAATGGAAAATGGGGAAGGATGAAAATGAAGAAAAGAATAATAATAGAGGAGTTGAAGAAGGTTGGTTCAATAGCTGTGCCAATGGTTGTGGTGACTATGCTTCAATATCTTTTGCAAGTGGTTTCATTGATGATGGTTGGTCATCTTGGCAAGCTTTCACTTTCTAGTGTTGCTCTTGCCACTTCTCTCACTAATGTTTCTGGTTTTGGTATTTTGTCAGGGATGGCTGGTGGATTGGAAACATTAAGTGGGCAAGCTTATGGAGCAAAGGAATATAAAAAATTTGGAACTTATACCTACACTGCCATTATCTCCCTCACTTTGGTTTGTGCCCCAATCACTGTTATATGGATTTTCTTAGACAAAATATTAATTCTCATAGGTCAAGACCCTACAATCTCCCATCAAGCTCAAAAATATGCAATTTGGCTTATACCTTCTCTTTTTGGTTCTGCAATTCTTAAACCTCTAACACGATTTTTCCAAACTCAAAGTTTAATTACCCCAATGATTCTAAGTTCTGCTATAGTCTTGTGCTTCCACATAGTGACATGTTGGACTCTAGTGTTTAAATTGAAGTTAGGAATTGTTGGTGCTGCAATTGCCTCCAGCTTATGCACTTGGTTGAATGTGGTGTTACTTTTGTGCTTTGTGAAATTTTCATCTTCTTGTGAGAAAACTCGTATCACATTTTCTAAGAAGGCTTTGCTTGGTGTTGGACTGTTCTTTCGGTTTGCTGTGCCTGCTGCAGTCATGGTTTGTCTTAAATGGTGGGCATGCGAATTGTTTGTATTGCTGGCTGGACTTTTTCCAAATCCAGGATTGGAGACATCAGTTCTATCTATATGCTTGACAATCTCTACATTGCACTTCACCATATCCTATTCAATTGGTGTTGCTACAAGCACAAGAGTTTCAAATGAATTAGGAGCAGGGAATACTGAGGCAGTTGGAGTGGCTGTATTTGCATCAATGTTCCTTGCAATGACAGAAGCTGTTATAATAAGTGCCACCTTATGTAGCTGCAGAAATATATTGGGTTATGCTTATACCAAAGAAAATATGATTGTTCATTACGTAGCTGTTATTACTCCTTTACTATCTCTCTCAGTTTTTATGGATAGCTTTCAAGCAGTTCTTTCAGGGGCTGCTAGAGGAGGTGGGTGGCAATATCTTGGAGCCTATGTGAATCTTGGATCATTTTATCTTGTAGGAGTTCCTGTAGGTGTTCTACTTGGTTTCACTGCACATTTCAGAGCAAAGGGTCTATGGATTGGAATAGTCGTTGGCTCAATTGTCCAATCAATTTTCCTTTCCCTTGTTACTGCTCTCACAAACTGGAAAAAACAGGCAAATATGGCAAGGGATAGAATATTTGATGCTACATATGTGAAGGAAAATGGAACAGATCATGCGAGTGTGACAAATACTTAA 1449 0.3872 MEEGDNGKWGRMKMKKRIIIEELKKVGSIAVPMVVVTMLQYLLQVVSLMMVGHLGKLSLSSVALATSLTNVSGFGILSGMAGGLETLSGQAYGAKEYKKFGTYTYTAIISLTLVCAPITVIWIFLDKILILIGQDPTISHQAQKYAIWLIPSLFGSAILKPLTRFFQTQSLITPMILSSAIVLCFHIVTCWTLVFKLKLGIVGAAIASSLCTWLNVVLLLCFVKFSSSCEKTRITFSKKALLGVGLFFRFAVPAAVMVCLKWWACELFVLLAGLFPNPGLETSVLSICLTISTLHFTISYSIGVATSTRVSNELGAGNTEAVGVAVFASMFLAMTEAVIISATLCSCRNILGYAYTKENMIVHYVAVITPLLSLSVFMDSFQAVLSGAARGGGWQYLGAYVNLGSFYLVGVPVGVLLGFTAHFRAKGLWIGIVVGSIVQSIFLSLVTALTNWKKQANMARDRIFDATYVKENGTDHASVTNT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0609 482 PANTHER MULTIDRUG RESISTANCE PROTEIN 14 459 - -
Lal18g0609 482 CDD MATE_eukaryotic 22 456 IPR045069 GO:0042910|GO:1990961
Lal18g0609 482 Pfam MatE 32 192 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal18g0609 482 Pfam MatE 253 415 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal18g0609 482 PANTHER PROTEIN DETOXIFICATION 14 459 - -
Lal18g0609 482 TIGRFAM matE: MATE efflux family protein 32 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0609 Lal-Chr18 5247549 5254072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0609 K03327 - gmx:100808206 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0609 18 5247549 5254072 Lal8g0458 8 3050541 3053536 ECH
Lal18g0609 18 5247549 5254072 Lal18g0609 18 5247549 5254072 ECH
Lal18g0609 18 5247549 5254072 Lal22g1372 22 16636728 16644792 LSH
Lal18g0609 18 5247549 5254072 Lal6g1719 6 19893884 19896873 LSH