Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1372 ATGGAAGAAGGTGATAATGAGAAATGGGAATGGATGAAGATAAGAAAAACATTAATGGAGGAGTTAAAAAAGGTTGGACCTATAGCATTACCAATGGTGGTTGTGACTATGTTACAATATCTTTTACAAGTTGTTTCATTCATGATGGTTGGTCATCTTGGCAAGCTTTCTCTTTCAAGTGTTGCTATTGCCACTTCTCTCACCAATGTTTTTGGCTTTAGTATTTTGTCAGGAATGGCTGGTGGATTAGAAACATTATGTGGCCAAGCATATGGAGCACAACAATATGAAAAATTTGGAACCTATACTTACACTGCAATAATCTCTCTCACTTTTATTTGTGCCCCAATCACTATTATTTGGATTTTCTTACACAAAATATTAATTCTCATAGGCCAAGACCCAATAATTTCTCATGAAGCTCATAAATATGGCATTTGGTTAATACCTGCTCTATTTGGTTCTGCAATTCTTAAACCTCTAACCAGATTTTTCCAAACTCAGAGTTTAATTACCCCAATGATTATAACTTCTGCTATAGTTTTGTGCTTTCATATAGTAACATGTTGGACTTTAGTGTATAAATTGAAGTTAGGAATTGTTGGTGCTGCAATTTCCACTAGCCTATGTACTTGGTTGAATGCGGTGTTACTTTTATGCTTTGTGAAGTTTTCTTCTGCTTGTGAGAATACACGTATTACATTTTCAAAGAAGGCTTTGCTTGGTATTCCAGAGTTTTTTCAGTTTGCTGTTCCAGCTGCAGTCATGGTTTGTCTTAAATGGTGGGCGTGCGAAGTGTTTGTATTGCTCTCTGGACTTTTCCCAAATCCTGAATTGGAGACATCGGTTCTATCCATATGCTTGACAATTTCTACATTGCACTTCACCATATCCTATGCAATTGGAGCTGCTACTAGCACAAGAGTTTCGAATGAATTAGGAGCAGGAAATCCTGAAGCAGTTAAAGTGGCTATTTATGCATCAATGTTCCTTGCAATAACAGAGGTTGTTATTGTAAGTGGCACACTATTTGGTTGCAGAAACATATTGGGTTATGCATATACCAAAGACAGTCTCATTGTTCATTATATTGCTCTTATTACTCCTTTCCTATGTCTCTCCATTTTCATGGATAGTTTGCAAGCAGTTCTTTCAGGTGTTGCTAGAGGAGGTGGGTGGCAATATCTTGGAGCCTATGTGAATCTTGGATCATTTTATATTGTAGGAGTTCCAATAGGTGTCACACTTGGCTTTGTTGCACATTTTAGGGCAAAAGGCCTTTGGATTGGAATAGTGTTGGGGTCCATTGTCCAATCAATTTTTCTTTCCCTTGTTACTGCTCTTACAAATTGGAAAAAACAGGCAAATATGGCAAGGGATAGATTATTTGATGGAACAAATAATGTGAGTGAGACAAATGTGTAA 1425 0.3698 MEEGDNEKWEWMKIRKTLMEELKKVGPIALPMVVVTMLQYLLQVVSFMMVGHLGKLSLSSVAIATSLTNVFGFSILSGMAGGLETLCGQAYGAQQYEKFGTYTYTAIISLTFICAPITIIWIFLHKILILIGQDPIISHEAHKYGIWLIPALFGSAILKPLTRFFQTQSLITPMIITSAIVLCFHIVTCWTLVYKLKLGIVGAAISTSLCTWLNAVLLLCFVKFSSACENTRITFSKKALLGIPEFFQFAVPAAVMVCLKWWACEVFVLLSGLFPNPELETSVLSICLTISTLHFTISYAIGAATSTRVSNELGAGNPEAVKVAIYASMFLAITEVVIVSGTLFGCRNILGYAYTKDSLIVHYIALITPFLCLSIFMDSLQAVLSGVARGGGWQYLGAYVNLGSFYIVGVPIGVTLGFVAHFRAKGLWIGIVLGSIVQSIFLSLVTALTNWKKQANMARDRLFDGTNNVSETNV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1372 474 TIGRFAM matE: MATE efflux family protein 31 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal22g1372 474 CDD MATE_eukaryotic 21 455 IPR045069 GO:0042910|GO:1990961
Lal22g1372 474 PANTHER PROTEIN DETOXIFICATION 11 458 - -
Lal22g1372 474 Pfam MatE 252 414 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal22g1372 474 Pfam MatE 31 191 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal22g1372 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1372 Lal-Chr22 16636728 16644792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1372 K03327 - gmx:100808206 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1372 22 16636728 16644792 Lal22g1372 22 16636728 16644792 ECH
Lal18g0609 18 5247549 5254072 Lal22g1372 22 16636728 16644792 LSH
Lal22g1372 22 16636728 16644792 Lal6g1719 6 19893884 19896873 LSH