Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0311 TATGTTGTTATTCGATGCTTAGCAGAGAAAGCATGCATAAAGCGTCTTCAGAAGGAATATAGAGCTCTCTGTAAAGAGCCAGTTTCCCATGTTGTGGCTCGTCCTTTGCCAAATGATATTCTCGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCATTTGCAGGTGGTTATTACTATGGAAAGATCAAATTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGGCGATTCATGACACAGAAAAAGATATGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCTGCATCAAGCATACTTACAGGGCTTCTTTCATTCATGATGGACAATAGTCCTACCACTGGCAGCGTGAATACCACCACCGCCGAGAAGCAGCATCTAGCAAAATCTTCCCTTGCTTTCAATTGCAAGAATGCAACATTCAGGAAAATGTTCCCTGAGTATGTGGAGAAGTACAACCAACAGCAACTTGCCTCTGAGCGGGTATCACCAGAGATGTCTATCTGTGAAAATACGAGGCCAGCTCCGGAAAAGTTTGTAGATTTGACGGAGGACGTGAAACGAGTAGATGAGTTGAAGGATGGTAGGAGAAACAAAAGGCAACCATCTCCAACTTGGATGATGTTCTTACTCTTATGCATCTTTGGGGTGGTAATGGCATTGCCTTTGCTTCAGCTGTTATGA 726 0.4325 YVVIRCLAEKACIKRLQKEYRALCKEPVSHVVARPLPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSASSILTGLLSFMMDNSPTTGSVNTTTAEKQHLAKSSLAFNCKNATFRKMFPEYVEKYNQQQLASERVSPEMSICENTRPAPEKFVDLTEDVKRVDELKDGRRNKRQPSPTWMMFLLLCIFGVVMALPLLQLL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0311 241 SMART ubc_7 14 168 - -
Lal18g0311 241 CDD UBCc 13 163 IPR000608 -
Lal18g0311 241 SUPERFAMILY UBC-like 12 163 IPR016135 -
Lal18g0311 241 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 168 IPR000608 -
Lal18g0311 241 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 240 - -
Lal18g0311 241 PANTHER BNAA06G11590D PROTEIN 9 240 - -
Lal18g0311 241 Gene3D Ubiquitin Conjugating Enzyme 6 182 IPR016135 -
Lal18g0311 241 Pfam Ubiquitin-conjugating enzyme 15 137 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0311 Lal-Chr18 2562877 2565424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0311 7 240 Miscellaneous Gene Families AT1G17280 75.630 1.40e-132 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0311 K04554 - gmx:100778181 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0311 18 2562877 2565424 Lal18g0311 18 2562877 2565424 ECH
Lal5g1664 5 18895928 18898806 Lal18g0311 18 2562877 2565424 LSH
Lal3g0132 3 825113 829577 Lal18g0311 18 2562877 2565424 LSH
Lal22g0533 22 3559620 3569507 Lal18g0311 18 2562877 2565424 LSH