Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0132 ATGGCATCGTCCTCTATAGTCTCCATATATAAATCATTATCATCGCAAAATCTGAATCAATTGAACGAACTTCGTATAGAAATTAATATCAAATCAATGGCGGATAAGTACAATCTCAAGAACCCCGCTGTTAAGCGGATTCTACAGGAGGTTAAGGAGATGCAATCCAATCCTTCCCACGATTTCATGAGCCTTCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCAATTAGAGGGCCCAGTGAGACTGAATTTGAGGGTGGTATATATCATGGGCGGATTCAATTGCCTGCAGAGTATCCATTCAAACCTCCTTCATTTATGTTGTTGACGCCTAATGGCCGTTTCGAGACCCAAACCAAGATTTGTTTGAGTATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGTGTTAGGACTGCTTTAGTTGCACTGATTGCGTTTATGCCTACCAACCCAAATGGTGCATTGGGCTCACTGGACTACAAGGAAGATGATAGGCGTGCCCTGGCCAATAAATCTCGTGAAGCACCTCCCAAATTCGGAACTCCTGAACGTCAAAAGCTAATCGATGAGATACACGAGTATATGCTGAGTAAAGCAACTTCTGCTCCTCTAGATAACCCTACACAAGCTCCTGAAGAACACCCTGGAAATGAGGAGGTTGAGGCCCAGGATAATTCATATAATCCGGAAGCTTTACCCAGAGAAGGGGTTCCAGATCAAGCTGGTGACAGAATTGTTGAAGAACAGGAAGTCCCTGCAAATGCTAACCCTTCAGGAGTTGAAGCTCCAAGGGAGGTTCAATCAACTGTTTCACGGAATCAGGTGCTCCAAACATCAGAGACAAGGGTTCAAAATCCAAAGCCCGCGACAAGGGTCCAAAAACCGGATGATCGGTTGTTCACTTTGGCAGCTGTTGGACTTACTGTTGCAATTATGGTCCTTTTGCTGAAGAAGTTCATTAAATCTACTGAATATGGTGCAGTTTTCTTCAATGGATCTTAG 1017 0.4356 MASSSIVSIYKSLSSQNLNQLNELRIEINIKSMADKYNLKNPAVKRILQEVKEMQSNPSHDFMSLPLEENIFEWQFAIRGPSETEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKEDDRRALANKSREAPPKFGTPERQKLIDEIHEYMLSKATSAPLDNPTQAPEEHPGNEEVEAQDNSYNPEALPREGVPDQAGDRIVEEQEVPANANPSGVEAPREVQSTVSRNQVLQTSETRVQNPKPATRVQKPDDRLFTLAAVGLTVAIMVLLLKKFIKSTEYGAVFFNGS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0132 338 MobiDBLite consensus disorder prediction 255 297 - -
Lal3g0132 338 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 42 197 IPR000608 -
Lal3g0132 338 SUPERFAMILY UBC-like 43 176 IPR016135 -
Lal3g0132 338 Pfam Ubiquitin-conjugating enzyme 46 157 IPR000608 -
Lal3g0132 338 SMART ubc_7 45 205 - -
Lal3g0132 338 Gene3D Ubiquitin Conjugating Enzyme 30 209 IPR016135 -
Lal3g0132 338 MobiDBLite consensus disorder prediction 206 243 - -
Lal3g0132 338 CDD UBCc 44 159 IPR000608 -
Lal3g0132 338 PANTHER BNAC01G21910D PROTEIN 37 337 - -
Lal3g0132 338 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 337 - -
Lal3g0132 338 MobiDBLite consensus disorder prediction 266 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0132 Lal-Chr3 825113 829577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0132 33 336 Miscellaneous Gene Families AT3G17000 64.516 5.19e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0132 K10578 - gmx:100798396 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1664 5 18895928 18898806 Lal3g0132 3 825113 829577 LSH
Lal3g0132 3 825113 829577 Lal18g0311 18 2562877 2565424 LSH