Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1664 ATGGCGGATAAGTACAATCTGAAGAACCCAGCGGTGAAGCGAATTCTTCAGGAAGTTAAGGAAATGCAATCTAACCCTTCCCATGATTTCATGAGTCTCCCTCTTGAGGAAAATATATTTGAATGGCAATTTGCAATTAGAGGGCCTTGTGATACTGAATTTGATGGTGGCATTTATCATGGACGGATTCAGTTGCCTGCAGAGTATCCATTCAAACCTCCTTCGTTTATGTTGTTGACACCTAATGGTCGTTTTGAGACCCAAACCAAGATTTGCCTTAGCATATCAAACCATCACCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACTGCTTTAGTTGCACTGATTGCATTCATGCCAACCAACCCAAATGGTGCATTGGGCTCGTTGGACTACAAGAAAGAAGATAGGTGTGCCTTGGCCATTAAATCTCGTGAAGCACCTCCCATATTTGGAACTCCTGAACGTCAAAAGCTAATTGATGAGATACATGAATATATGCTAAGCAAAGCACCTGCTGCCCAAGATAACCCTACAAAAGCTCATGAAGAACACTCTAGAAATGAGGAGGCTGAGGCCCAGACTAATTCACATAACCCCGAGGCTTTACCTGCAGGAGAGGAGGTTCCAGATCAAGCTGGTGACGGAATTGTTGAAGAACAGGAAGTCACTGCAAATGCTGATCCTGCAGGAGTTGAAGCTCCAAGGGAGGTTCAATCAAGTGTTTCAAGGAATCAGGTCCTCCCAACATCAGAAACAAGGGTTCAAAATCTAAAGCCCACGACAACGGCCCAGAAATCTGATGATCGGTTGTTTACATTGGCAGCTATTGGACTTACTATTGCAATTGCTGTCCTGTTGCTCAAGAAGTTCATTAAATCTACCGAATATGGTGAAGTTTTCTTCAGTGGATCTTAG 921 0.4376 MADKYNLKNPAVKRILQEVKEMQSNPSHDFMSLPLEENIFEWQFAIRGPCDTEFDGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEDRCALAIKSREAPPIFGTPERQKLIDEIHEYMLSKAPAAQDNPTKAHEEHSRNEEAEAQTNSHNPEALPAGEEVPDQAGDGIVEEQEVTANADPAGVEAPREVQSSVSRNQVLPTSETRVQNLKPTTTAQKSDDRLFTLAAIGLTIAIAVLLLKKFIKSTEYGEVFFSGS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1664 306 MobiDBLite consensus disorder prediction 178 195 - -
Lal5g1664 306 MobiDBLite consensus disorder prediction 228 252 - -
Lal5g1664 306 SMART ubc_7 13 173 - -
Lal5g1664 306 MobiDBLite consensus disorder prediction 173 212 - -
Lal5g1664 306 SUPERFAMILY UBC-like 11 128 IPR016135 -
Lal5g1664 306 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Lal5g1664 306 CDD UBCc 12 147 IPR000608 -
Lal5g1664 306 PANTHER BNAC01G21910D PROTEIN 6 303 - -
Lal5g1664 306 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 303 - -
Lal5g1664 306 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 173 IPR000608 -
Lal5g1664 306 Gene3D Ubiquitin Conjugating Enzyme 2 205 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1664 Lal-Chr5 18895928 18898806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1664 1 303 Miscellaneous Gene Families AT3G17000 63.462 8.35e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1664 K10578 - gmx:100798396 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1664 5 18895928 18898806 Lal3g0132 3 825113 829577 LSH
Lal5g1664 5 18895928 18898806 Lal18g0311 18 2562877 2565424 LSH