Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0533 ATGGCAGAAAAATCATGCATCAAGCGCCTTCAGAAGGAGTATAGAGCTCTTTGTAAAGAGCCTGTTTCCCATGTTGTAGCTCGTCCTTCACCAAATGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGGATCAGCATGACTACACCCAATGGACGGTTCATGACTCAGAAAAAGATTTGTTTGTCTATGAGTGATTTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTGTCAAGCATACTTACAGGACTTCTTTCATTCATGATGGACAACAGTCCAACTACTGGCAGTGTAAACACCACTACCGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCCTTCAATTGTAAGAATGCAACATTCAGGAAAATGTTCCCCGAGTATGTGGAGAGGTACAACCAGCAGCAGCTTTCTGAGCAAGTTGCTTCTGAGAGGGAATCATCAGAGGCCTCTAATGACAAAACTTCAAAGCCTCTTTTGGAAAAGAATGCAGATTCTACAAGGGAAGACACGGAAAAAGTAGATGGCTTGAAAGAGGTTGAGCACAAGTGGCTAACGGTTACGTTATCCAAGATTGCAAATGCACAGTTCTCCTTGCAATATCATTTATGTTCACTAAAGGTGCAAACACCATATCATGGCAAAATATCATCAGTCTCATTTGCATTCTGTAATGAGCATAGTGCTGTTTGTGCTTGGAAATCCTTGGGAAGGTGTAGACTAATGATTAAGGCAATTGCTACTACCCTTGAACCATATAACTTGACTGCAAAGAAAGGTGAATGTTTGGGTTCCAAAGACTTGGATCTGGGTCTAAGTCCTAATCCACATGAGGTTCTGCTTGAATCTTCCAATGAAGAGTCAGAAGAACCTGATGAAAAGGAGAGGTTGAGAAGAATGAAGATTTCGAAAGCGAATAAGGGACAAGCGGCATGGAACAAAGGGAGAAAGCACAGTGCTGAAACTTTGCGGAAAATCAGGGAAAGAACAAGGCTCGCAATGCAGAATCCTAAGATAAAAATGAAGTTAGCTAATGTTCGGCATCCACAAACTATTGAAACAAGACAGAAGATAGCTGCTGGAGTGAAAATGAGATGCAAAAGGAGGCGTGAAAGGAAGGTGGTGCAGGAAACGTGCTGCTTCAAGTGGCAGAATTTAATTGCAGAAGCTTCTAGACGAGGCTGTGCTGATCAGGAAGAGCTGCAATGGAATTCCTTTGAAATCTTGAATGAACAGCTGGAACTAGAGTGGTTAGCGAGTGTCGAAGAATGTAAAAAGATGCCAAGGGAACCAGGTAGCAATAGAGCACCCAAGACCCCAGAACACAGAAGGAAAATTGCAGCAGCGATCTCTGCAAAATGGGCTGACCCTGTGAGTACATTGGCTGGCTTCTTGAGTCTTGACCAGCATTTTTTTCCTGCAAATCAGGAATACGTCAATAAAGTTTTCTCTGCAAAGGGCAATCATCATGGCACTGAAAGGGCTGAAAGGAAACCAAGAAGGAAGCCAAGTGCACAATCCACAAGGAAGAACCCAGTAGTGAAAATGAATAGTAATGCTAACATTGATGTTAAGAGTGACACCAAATTTCTTAGCTATATCAGGTTGAAAAAAAACATGTCTCCTCCTTCCTTCAAGGATCCTTTGGTGAGTTCTAAGCTGGAGATGTTAAAGACCATTAGAGTACAGAGATATGCTGCAGATACCGAACTGACTAAAGCCATTCAACAAGCAAGGCTATTGATTGCTGAAGCAGAGAAAGCAGCTCAGGCACTTGAGGTTGCCATCACAAAGAGTCACATTGCTCAAACTTCCCTCATAGAAACTAGGCAGCTTATAGCTGAAGCAATTCAATCACTTAAATCCATTGATGCACAAGGCATCATTGTGAGTAATGTTCCTTCTCTTGCTTCAAGTGAGGTCAAGAAGGAAAAGGATGCAGACTTTGAAGGTCTAAACCAATCACATAATGACCCGGTAAACGGACACAAAACATTGTCAAGTGATTACAAGTTCTCCAATGATTTAGGAAATTTTTTGTTGAAGAAGTTTGTTGGTGGTGATTCAGAACTTCAGCCAACAAGTATCAATGAATGTGCTTCACTCCTTGTTGGTTTTAACTGCAAGATAAAGCAATCTAGTTCATCAAATCAACAAAGTCAAACAGAACATGAGCATAGTAGTAAATACAAAATAGACACTTCTTCAACTGTGTTGGGAATTCAGTCCATCAAAGAGGAGCAACAATCTAGTTCAACTACTGTAACTAAAAAGTGGGTCTGTGGAAGGCTTGTTGAAGTGGTTAAACAGTAG 2397 0.4147 MAEKSCIKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVERYNQQQLSEQVASERESSEASNDKTSKPLLEKNADSTREDTEKVDGLKEVEHKWLTVTLSKIANAQFSLQYHLCSLKVQTPYHGKISSVSFAFCNEHSAVCAWKSLGRCRLMIKAIATTLEPYNLTAKKGECLGSKDLDLGLSPNPHEVLLESSNEESEEPDEKERLRRMKISKANKGQAAWNKGRKHSAETLRKIRERTRLAMQNPKIKMKLANVRHPQTIETRQKIAAGVKMRCKRRRERKVVQETCCFKWQNLIAEASRRGCADQEELQWNSFEILNEQLELEWLASVEECKKMPREPGSNRAPKTPEHRRKIAAAISAKWADPVSTLAGFLSLDQHFFPANQEYVNKVFSAKGNHHGTERAERKPRRKPSAQSTRKNPVVKMNSNANIDVKSDTKFLSYIRLKKNMSPPSFKDPLVSSKLEMLKTIRVQRYAADTELTKAIQQARLLIAEAEKAAQALEVAITKSHIAQTSLIETRQLIAEAIQSLKSIDAQGIIVSNVPSLASSEVKKEKDADFEGLNQSHNDPVNGHKTLSSDYKFSNDLGNFLLKKFVGGDSELQPTSINECASLLVGFNCKIKQSSSSNQQSQTEHEHSSKYKIDTSSTVLGIQSIKEEQQSSSTTVTKKWVCGRLVEVVKQ 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0533 798 MobiDBLite consensus disorder prediction 174 201 - -
Lal22g0533 798 MobiDBLite consensus disorder prediction 516 541 - -
Lal22g0533 798 Pfam NUMOD3 motif 328 355 IPR003611 GO:0003677
Lal22g0533 798 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Lal22g0533 798 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Lal22g0533 798 CDD UBCc 7 157 IPR000608 -
Lal22g0533 798 SUPERFAMILY UBC-like 6 155 IPR016135 -
Lal22g0533 798 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Lal22g0533 798 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 219 795 - -
Lal22g0533 798 MobiDBLite consensus disorder prediction 167 201 - -
Lal22g0533 798 Coils Coil 603 623 - -
Lal22g0533 798 SMART ubc_7 8 162 - -
Lal22g0533 798 MobiDBLite consensus disorder prediction 516 530 - -
Lal22g0533 798 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 219 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0533 Lal-Chr22 3559620 3569507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0533 1 207 Miscellaneous Gene Families AT1G17280 80.676 8.48e-121 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0533 - - lang:109332957 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0533 22 3559620 3569507 Lal18g0311 18 2562877 2565424 LSH