Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0199 ATGTATCGTAGACTTCTCTCTTCTCACCTCAAAACCCTCACTTCTTCTCTCTCTCCTCCCCGATCTCCTTCCTCCGCCGCCGCCATCGCCACCGCCGCTCCTCCTTCACTCTCTTCCCTCTCCCGCCGCCACTTTTCAGATGATACGAGTGCGGTGAAAAAGAAGGTTGAAGATGTACTACCAATCGCTACTGGTCACGAACGTGAGGAAATTCAAGCTCAACTTGAGGGAAGGGATATTCTTGAAATAAACTATCCTGAAGGTCCTTTTGGCACAAAGGAAGAACCTGCAGTTGTCAAATCATACTATGATAAAAGAATAGTCGGGTGCCCAGGAGGTGAAGACGGTGAGTTTTCCTTATCTATCTCAATATATCTTTGTGTTCATGATTCTCCACAAGTTGATGAAAAATTCCAGAATTTTGGCTATAGCACTGACAAGGTGAACACCTTTTTTATTGCAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCAGTGTGCTCACAGTATTTTGTGCTTGAAGTAGTGGGACCTGGTGGACCACCCGATGGACATGGCGACGATGATCATCACCATTGA 606 0.4637 MYRRLLSSHLKTLTSSLSPPRSPSSAAAIATAAPPSLSSLSRRHFSDDTSAVKKKVEDVLPIATGHEREEIQAQLEGRDILEINYPEGPFGTKEEPAVVKSYYDKRIVGCPGGEDGEFSLSISIYLCVHDSPQVDEKFQNFGYSTDKVNTFFIAEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHHH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0199 201 CDD Cyt_c_Oxidase_Vb 51 185 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal18g0199 201 SUPERFAMILY Rubredoxin-like 51 117 - -
Lal18g0199 201 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 51 189 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal18g0199 201 Gene3D q5lls5 like domains 152 201 - -
Lal18g0199 201 Gene3D Cytochrome c oxidase, subunit Vb 52 141 IPR036972 GO:0005740|GO:0005751|GO:0006123
Lal18g0199 201 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 154 201 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal18g0199 201 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 117 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal18g0199 201 PANTHER - 1 117 - -
Lal18g0199 201 PANTHER - 154 201 - -
Lal18g0199 201 SUPERFAMILY Rubredoxin-like 155 188 - -
Lal18g0199 201 Pfam Cytochrome c oxidase subunit Vb 58 118 IPR002124 GO:0005740|GO:0005751|GO:0006123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0199 Lal-Chr18 1653875 1656783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0199 K02265 - sspl:121801534 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0199 18 1653875 1656783 Lal8g0218 8 1454175 1457657 ECH
Lal18g0199 18 1653875 1656783 Lal18g0199 18 1653875 1656783 ECH
Lal25g0265 25 1808678 1811742 Lal18g0199 18 1653875 1656783 PCT
Lal10g1163 10 18267776 18270951 Lal18g0199 18 1653875 1656783 PCT
Lal8g0218 8 1454175 1457657 Lal18g0199 18 1653875 1656783 PCT
Lal18g0199 18 1653875 1656783 Lal25g0265 25 1808678 1811742 PCT
Lal18g0199 18 1653875 1656783 Lal10g1163 10 18267776 18270951 PCT
Lal18g0199 18 1653875 1656783 Lal8g0218 8 1454175 1457657 PCT