Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1163 ATGTGGCGAAGACTCTTCTCTTCTAACCTCAAATCCCTATCAACTACTACTTCTCATCACCGATCCGCTTCTACCGCCTTCCGATTCGCCGCCACCGCCACCGCCGCTCCTCCCTCCGCCACTCGCTTCCTTACCACCCAATCAGGTGGTTCGATCAAGAGGGTTGAGGATGTAGTGCCAATTGCTACTGGTCATGAACGCGAGGAGATTCAGGCTCACCTTCAGGGAAGGGATATTCTTGAAATAGACCACCCCGAAGGTCCTTTTGGGACAAAGGAAGCACCTGCTATTGTTAAGTCATACTATGATAGAAGGATAGTTGGATGCCCAGGAGGTGAAGGCGAGGATGAGCACGACGTCGTCTGGTTTTGGCTGGAGAAAGGCAAGCATTTTGAATGTCCAGTGTGCACACAATATTTTGAGCTTGAAGTGGTTGGACCTGGTGGGGATCCTTATGGACATGGCGACCACAGTCACCATTGA 483 0.5114 MWRRLFSSNLKSLSTTTSHHRSASTAFRFAATATAAPPSATRFLTTQSGGSIKRVEDVVPIATGHEREEIQAHLQGRDILEIDHPEGPFGTKEAPAIVKSYYDRRIVGCPGGEGEDEHDVVWFWLEKGKHFECPVCTQYFELEVVGPGGDPYGHGDHSHH 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1163 160 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 160 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal10g1163 160 Gene3D Cytochrome c oxidase, subunit Vb 51 145 IPR036972 GO:0005740|GO:0005751|GO:0006123
Lal10g1163 160 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 50 149 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal10g1163 160 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B 1 160 - -
Lal10g1163 160 CDD Cyt_c_Oxidase_Vb 53 147 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal10g1163 160 Pfam Cytochrome c oxidase subunit Vb 61 150 IPR002124 GO:0005740|GO:0005751|GO:0006123
Lal10g1163 160 SUPERFAMILY Rubredoxin-like 54 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1163 Lal-Chr10 18267776 18270951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1163 K02265 - gmx:100801050 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1163 10 18267776 18270951 Lal25g0265 25 1808678 1811742 ECH
Lal10g1163 10 18267776 18270951 Lal10g1163 10 18267776 18270951 ECH
Lal25g0265 25 1808678 1811742 Lal10g1163 10 18267776 18270951 LSH
Lal10g1163 10 18267776 18270951 Lal8g0218 8 1454175 1457657 LSH
Lal10g1163 10 18267776 18270951 Lal18g0199 18 1653875 1656783 PCT
Lal18g0199 18 1653875 1656783 Lal10g1163 10 18267776 18270951 PCT