Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1075 ATGGAAATTGAGCCTAACCAACCAGTGGTAGCAAAGAAGTTATGGAACATAGTACGTGTATTATTCTTCATGTTTAGAAAAGGCATAGCCAAAAGCAAAATATTGGTAGACTTTAATATGTTGCTCAAACGTGGCAAACTAGCCGGCAAGGCCTTAGTGAACAACCTCATGCTCCACCACCACCACTTTGCAGCGGCCTTCGCTTGCCGCCACCACGACACAAATCTCTCCTTCATATCTCCCAGAGAGTATGAATTCAGCTGCAGCAATAGCCCTACCATCCCTTTTCACACCATCAAACGCAAGCACCACTATTCTAACAGGTTGTCCAAGTCGTGCCAATACGACGACGTTTCCACCTTGAGTGCTGTTCAAAGGGTGCTTGAAATGTTGAATAATGAGAAAGTTGAAGCTTCCCCTATGGTGAATTTGCCTGGGTTTGGGAAGAGCCCTATTGTGAAACAGTTAAGAGTTACTGATTCACCTTTTCCATTGAAGGATGATGGGGATAGCCAAGTAGACTTGGAAGCTGAGGAATTCATTAAGAGATTCTATAAGGACCTTAACTTGCAAAAGAGAATGGCTATTGAGTCACCATACCATAGCTTTTGGGGTAGATGA 621 0.4364 MEIEPNQPVVAKKLWNIVRVLFFMFRKGIAKSKILVDFNMLLKRGKLAGKALVNNLMLHHHHFAAAFACRHHDTNLSFISPREYEFSCSNSPTIPFHTIKRKHHYSNRLSKSCQYDDVSTLSAVQRVLEMLNNEKVEASPMVNLPGFGKSPIVKQLRVTDSPFPLKDDGDSQVDLEAEEFIKRFYKDLNLQKRMAIESPYHSFWGR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1075 206 Pfam Cotton fibre expressed protein 171 200 IPR008480 -
Lal16g1075 206 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 4 201 - -
Lal16g1075 206 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 4 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1075 Lal-Chr16 7198689 7199309 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1075 - - qsu:112027219 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1075 16 7198689 7199309 Lal8g0260 8 1733103 1733922 ECH
Lal16g1075 16 7198689 7199309 Lal10g1119 10 18017627 18018130 ECH
Lal16g1075 16 7198689 7199309 Lal17g0328 17 2080163 2080786 ECH
Lal16g1075 16 7198689 7199309 Lal16g1075 16 7198689 7199309 ECH
Lal16g1075 16 7198689 7199309 Lal8g0368 8 2467145 2467789 PCT
Lal8g0368 8 2467145 2467789 Lal16g1075 16 7198689 7199309 PCT