Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1119 ATGGATCTCAACATGATCCTCAAACGTCGTGGCAAGATCGCCGGAAAAGCCATCACAAATCTAATTTTCCACCACCACCACCACCATGGTGGAAGCTCCACCACTAGCCACAATGACTCCACCCTACAATTCTCCGCCCAAAGAGAGTATGAGTTTAGTTGTAGCAACACTCCAAACCACTTCTTCTCTATAGGCGGGAAGCGCCATAACCGCAACCAAAACCACAATCACCATTTTACGCCACCCACCATGGACGAGGATAACACGGTAACAATGAATGAGATGAAGGTTGTGTTGGAAATGCTAAACAATAATAATAGTGAGGTTATGGTGGAGTCATCATATTCATCACCGGCAATTCCTGGGTTCGGAAAGAGCCCTATGGAGAGACAGCTGAGGGTGGCAGACTCGCCGTTACCGATGGGAGACGCCGAAAACATGGTGGACAAGAAGGCAGGGGAGTTCATAAAGAGGTTCTACAAGGAGTTGAGGAAGCAGGATTGA 504 0.4802 MDLNMILKRRGKIAGKAITNLIFHHHHHHGGSSTTSHNDSTLQFSAQREYEFSCSNTPNHFFSIGGKRHNRNQNHNHHFTPPTMDEDNTVTMNEMKVVLEMLNNNNSEVMVESSYSSPAIPGFGKSPMERQLRVADSPLPMGDAENMVDKKAGEFIKRFYKELRKQD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1119 167 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 166 - -
Lal10g1119 167 Pfam Cotton fibre expressed protein 146 166 IPR008480 -
Lal10g1119 167 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1119 Lal-Chr10 18017627 18018130 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1119 - - gsj:114386903 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1075 16 7198689 7199309 Lal10g1119 10 18017627 18018130 ECH
Lal10g1119 10 18017627 18018130 Lal10g1119 10 18017627 18018130 ECH
Lal10g1119 10 18017627 18018130 Lal17g0328 17 2080163 2080786 ECH
Lal10g1119 10 18017627 18018130 Lal8g0261 8 1742478 1743317 LSH