LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0488	ATGGCTGGAGCATTAAAAAGGTGCATGATGTTGTGTTGTACAAGCAAAATTGTCAAGAAGGAAGACATGGCTGAAGAATCGTACGAGGAGGCTATCGCACGGTTGACCCAGCTTCTCAGCGAAAAAGCTGACCTCGGAGGCGTTGCCGCCGCAAAGATCAGGCAGTTGACGGAGGAGCTAGAGACGGAGGGTTCGAAACCATTTAACCCGGACGAGAGGATCAAAAGCGGGTTCATCCACTTTAAGGCTGAGAAATTCGAGAAGAATCCTGATTTGTATGGCGAGCTTGCCAAAGGCCAGAGTCCAAAGTTTATGGTATTTGCATGCTCAGATTCAAGAGTATGCCCATCACATATTCTGGATTTCCAACCAGGTGAAGCCTTTGTTGTCCGAAACATCGCCAACATGGTTCCACCCTTTGACAAGACCAAGTATTCAGGAGCTGGTGCAGCCATTGAATACGCAATCTTGCATTTAAAGGGGTATTCTAAAGGATATGCCTTACAGGTGGAGAATATTGTAGTTATTGGACATAGCTGCTGTGGAGGCATAAAGGGTCTCATGTCCATCCCAGATGATGGGACCACTGCAAGTGACTTCATAGAAAACTGGGTGCAAATATGTAATCCAGCAAGGTCCAAGGTTAAAGTAGAAGCAAGCAGCTTAAGTTTCTCTGAGCAGTGTACTAACTGTGAGAAGGAAGCTGTGAATGTATCACTTGGGAACCTGTTGACTTATCCATTTGTGAGAGATGGGTTGGTGAAGAAAACACTCTCTTTGAAAGGAGCACATTATGACTTTGTTAATGGAACTTTTGAGCTATGGGATTTGAACTTCAAACTTTTGCCACCAGTATCAGTTTAG	864	0.4479	MAGALKRCMMLCCTSKIVKKEDMAEESYEEAIARLTQLLSEKADLGGVAAAKIRQLTEELETEGSKPFNPDERIKSGFIHFKAEKFEKNPDLYGELAKGQSPKFMVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPFDKTKYSGAGAAIEYAILHLKGYSKGYALQVENIVVIGHSCCGGIKGLMSIPDDGTTASDFIENWVQICNPARSKVKVEASSLSFSEQCTNCEKEAVNVSLGNLLTYPFVRDGLVKKTLSLKGAHYDFVNGTFELWDLNFKLLPPVSV	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0488	287	SUPERFAMILY	beta-carbonic anhydrase, cab	61	283	IPR036874	GO:0004089\|GO:0008270
	Lal15g0488	287	CDD	beta_CA_cladeB	77	275	IPR045066	GO:0004089\|GO:0008270
	Lal15g0488	287	Pfam	Carbonic anhydrase	105	271	IPR001765	GO:0004089\|GO:0008270
	Lal15g0488	287	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	109	116	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Lal15g0488	287	Gene3D	Carbonic anhydrase	62	287	IPR036874	GO:0004089\|GO:0008270
	Lal15g0488	287	PANTHER	CARBONIC ANHYDRASE	23	287	IPR001765	GO:0004089\|GO:0008270
	Lal15g0488	287	SMART	Pro_CA_2	97	276	IPR001765	GO:0004089\|GO:0008270
	Lal15g0488	287	PANTHER	CARBONIC ANHYDRASE	23	287	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0488	Lal-Chr15	3329231	3342192	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g0488	K01673		-	gmx:100803945	496.893

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal15g0488	15	3329231	3342192	Lal15g0488	15	3329231	3342192	ECH
	Lal15g0488	15	3329231	3342192	Lal17g0920	17	7270831	7272888	ECH
	Lal15g0488	15	3329231	3342192	Lal13g1888	13	18374354	18378477	ECH
	Lal15g0488	15	3329231	3342192	Lal24g1441	24	15681019	15684588	ECH