Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1888 ATGTCGACCTTTTCCATAAACGGTTGGTGTATCTCTTCTGCCAAAACTACTCTTAACAAAGCCACATTGCGCCCTTCAGTCTTTGCATCCCTTAACACTAACCCTTCTTCTTTCCCTTCTCTCATTCAAGACAAGCCTGTTTTTGCTGCACCTTCTTCCATCATCACTCCAGTTGTGAGAGAGGATATGGGTAAGAACTATGAGGAAGCAATTGAGGAGCTCCAGAAACTGCTAAGAGAGAAGAATGGACTGAAAGCCACAGCAGCTGAAAAGGTAGAGCAGATAACAGCAGAGTTGAGCACACCATCATCTGAAGGAGTAGCATCATCAGAAGCATCTGAGAGGATCAAAACTGGTTTCCTTTACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAGAGCCCCAAGTTTATGGTGTTTGCTTGCTCTGACTCTAGAGTATGTCCATCACATGTGTTAGATTTCCAACCAGGAGAGGCCTTTGTGGTCAGAAATGTTGCTAACATTGTCCCACCATATGACCAGTCCAAATATGCTGGAGCTGGAGCTGCTATTGAGTATGCAGTTTTGCACCTCAAGGTGTCTGAAATTGTGGTGATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTCTCTCTTTCCCATACAATGGAACCTACTCCACTGATTTCATTGAGGAATGGGTCAAAATTGGTTTACCTGCAAAGGCAAAGGTGAAAGCAGCACATGGGGATGCCCCATTTGCAGAGCTATGCACACACTGTGAGAAGGAGGCAGTGAATGTTTCCCTTGGAAACCTGCTAACCTACCCATTTGTTAGAGATGGATTGGTGAACAAGACATTGGCACTGAAAGGAGGATACTATGACTTTGTTAAGGGTTCTTTTGAGCTCTGGGGCCTTGAGTTTGGCCTTGCTTCTTCTTTCTCCGTATGA 963 0.4476 MSTFSINGWCISSAKTTLNKATLRPSVFASLNTNPSSFPSLIQDKPVFAAPSSIITPVVREDMGKNYEEAIEELQKLLREKNGLKATAAEKVEQITAELSTPSSEGVASSEASERIKTGFLYFKKEKYDKNPALYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQSKYAGAGAAIEYAVLHLKVSEIVVIGHSACGGIKGLLSFPYNGTYSTDFIEEWVKIGLPAKAKVKAAHGDAPFAELCTHCEKEAVNVSLGNLLTYPFVRDGLVNKTLALKGGYYDFVKGSFELWGLEFGLASSFSV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1888 320 Pfam Carbonic anhydrase 147 304 IPR001765 GO:0004089|GO:0008270
Lal13g1888 320 PANTHER CARBONIC ANHYDRASE 1 320 IPR001765 GO:0004089|GO:0008270
Lal13g1888 320 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 195 215 IPR015892 GO:0004089|GO:0008270|GO:0015976
Lal13g1888 320 Gene3D Carbonic anhydrase 100 320 IPR036874 GO:0004089|GO:0008270
Lal13g1888 320 Coils Coil 60 94 - -
Lal13g1888 320 CDD beta_CA_cladeB 119 308 IPR045066 GO:0004089|GO:0008270
Lal13g1888 320 SMART Pro_CA_2 139 309 IPR001765 GO:0004089|GO:0008270
Lal13g1888 320 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 151 158 IPR015892 GO:0004089|GO:0008270|GO:0015976
Lal13g1888 320 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 1 320 - -
Lal13g1888 320 SUPERFAMILY beta-carbonic anhydrase, cab 113 314 IPR036874 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1888 Lal-Chr13 18374354 18378477 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1888 K01673 - gmx:100500448 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1888 13 18374354 18378477 Lal17g0921 17 7284957 7306739 ECH
Lal13g1888 13 18374354 18378477 Lal13g1888 13 18374354 18378477 ECH
Lal15g0488 15 3329231 3342192 Lal13g1888 13 18374354 18378477 ECH
Lal13g1888 13 18374354 18378477 Lal24g1441 24 15681019 15684588 LSH