Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1086 ATGGCTGGTATCTTGTCTTTGGTAACTGGGAAACCAGGAAGTAGTGGATTTGGATCAGCCTCAACTGCAGAAAAGGTTACTGATGGAATTGATGCCACCAACCTTACTGCAATTATAACAGGAGGAGCAAGTGGTATTGGGTTAGAGACAGCACGGGTTCTGTGTCTTAGAAAAGCGCATGTCATTATTGCTGTGAGAAATATGGACTCAGCAAAAGAAGCTAAACAGCTTATACTACAAGAAAACCAGTCTGCAAGAGTAGATATAATGAAGCTTGACCTATGCTCATTGAAGTCTGTTACATCTTTTGTGGACAAATTCATTGCTCTTGATCTTCCTCTAAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCATTCCAGCTCTCACAGGATGGGATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCATTTGACAAACCTTCTTCTTAACAAAATGAAACAAACTGCAAAAGCTACTGGAATTGAGGGAAGGATCATAAATCTGTCATCAATTGCACACACCTATACTTACCAAGAAGGCATTAGATTCGATGCCATCAATGATCAAAATGGTTATTCAGACAAGAAAGCTTATGGACAGTCCAAATTAGCCAACATACTACATGCAAATGAGCTTTCTCGTCGCTTGAAGGGAGCTGCCACAACATGCTATGTTGCTCTCCACCCAAACTTGAAAGGTATAAGTGGGAAGTACTTTTTGGATTGCAATGAATTTGAACCAAGTGCATTTGCCAAAGACAAAATCTTAGCAAGTAAACTCTGGGATTTCAGCAACAATTTTATCAAATCACTATCAAAACCTTGA 840 0.394 MAGILSLVTGKPGSSGFGSASTAEKVTDGIDATNLTAIITGGASGIGLETARVLCLRKAHVIIAVRNMDSAKEAKQLILQENQSARVDIMKLDLCSLKSVTSFVDKFIALDLPLNILINNAGVMFCPFQLSQDGIEMQFATNHLGHFHLTNLLLNKMKQTAKATGIEGRIINLSSIAHTYTYQEGIRFDAINDQNGYSDKKAYGQSKLANILHANELSRRLKGAATTCYVALHPNLKGISGKYFLDCNEFEPSAFAKDKILASKLWDFSNNFIKSLSKP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1086 279 Pfam short chain dehydrogenase 36 184 IPR002347 -
Lal13g1086 279 Gene3D - 7 276 - -
Lal13g1086 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lal13g1086 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lal13g1086 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lal13g1086 279 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lal13g1086 279 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lal13g1086 279 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lal13g1086 279 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 222 275 - -
Lal13g1086 279 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 222 - -
Lal13g1086 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 251 IPR036291 -
Lal13g1086 279 PANTHER RETINOL DEHYDROGENASE 222 275 - -
Lal13g1086 279 PANTHER RETINOL DEHYDROGENASE 3 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1086 Lal-Chr13 8172222 8181061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1086 K11153 - gmx:100781156 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1086 13 8172222 8181061 Lal24g0817 24 6470739 6477900 LSH
Lal12g0609 12 4391283 4395852 Lal13g1086 13 8172222 8181061 LSH
Lal20g0058 20 399546 400873 Lal13g1086 13 8172222 8181061 PCT
Lal13g1086 13 8172222 8181061 Lal20g0058 20 399546 400873 PCT