Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0817 ATGATGTGTCTTAGAAAAGCACATGTGATTATAGCTGTGAGAAACATGGATTCTGCAAAAGAAGCTAAACAGCTTATACTAAAGGAAAACCAGTGTGCTAGAGTGGACATAATGAAGCTTGACCTTTGCTCAGTGAAATCTGTTACATCTTTTGTGGACAACTTCATTGCTCTTCATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTCATGTTCTGTCCCTTCCTGCTCTCAGAGGATGGGATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCATTTGACAAATCTTCTTCTTGACAAAATGAAACAAACCGCAAAAGCCACTGGAATTGAGGGCAGGATCATAAATCTATCATCAATTGCTCATACCTACACTTATGAAGATGGCATTCAATTCGATGCTATTAATGATAAAATTGGTTATTCTGACAAGAAGGCTTATGGGCAGTCCAAGTTAGCCAACATACTTCATGCAAATGAGCTTTCTCGTCGCTTGAAGAAGGAAGGTGTGAACATAACAGCAAACTCAGTCCATCCAGGAGTGATAATGACACCTCTTATGAGACATTCATCTTTACAAATGAATTTTCTGAAGATGTTCACTTTTTACATATGGAAGAATGTCCCACAGGGAGCAGCAACCACATGCTATGTTGCACTCCACCCAAGCTTGAAAGGTGTAACTGGGAAGTACTTTCTGGATTGCAATGAGTTTCAACCAAGTGCATTTGCCAGAGATAAAATCTTAGGTAGCAAACTTTGGGATTTCAGCAACAAGTTGATCAAATCACTTTCAAAACCTTGA 816 0.3885 MMCLRKAHVIIAVRNMDSAKEAKQLILKENQCARVDIMKLDLCSVKSVTSFVDNFIALHLPLNILINNAGVMFCPFLLSEDGIEMQFATNHLGHFHLTNLLLDKMKQTAKATGIEGRIINLSSIAHTYTYEDGIQFDAINDKIGYSDKKAYGQSKLANILHANELSRRLKKEGVNITANSVHPGVIMTPLMRHSSLQMNFLKMFTFYIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFARDKILGSKLWDFSNKLIKSLSKP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0817 271 PANTHER RETINOL DEHYDROGENASE 2 267 - -
Lal24g0817 271 Pfam short chain dehydrogenase 6 195 IPR002347 -
Lal24g0817 271 CDD retinol-DH_like_SDR_c_like 5 258 - -
Lal24g0817 271 Gene3D - 2 268 - -
Lal24g0817 271 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 267 - -
Lal24g0817 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 243 IPR036291 -
Lal24g0817 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 60 71 IPR002347 -
Lal24g0817 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 116 124 IPR002347 -
Lal24g0817 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 IPR002347 -
Lal24g0817 271 PRINTS Glucose/ribitol dehydrogenase family signature 60 71 IPR002347 -
Lal24g0817 271 PRINTS Glucose/ribitol dehydrogenase family signature 110 126 IPR002347 -
Lal24g0817 271 PRINTS Glucose/ribitol dehydrogenase family signature 174 191 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0817 Lal-Chr24 6470739 6477900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0817 K11153 - gmx:100807056 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0817 24 6470739 6477900 Lal24g0817 24 6470739 6477900 ECH
Lal13g1086 13 8172222 8181061 Lal24g0817 24 6470739 6477900 LSH
Lal20g0058 20 399546 400873 Lal24g0817 24 6470739 6477900 PCT
Lal24g0817 24 6470739 6477900 Lal20g0058 20 399546 400873 PCT