Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0048 ATGCAACCCCGGCAGAGCTCGAGAATCGATTTGGGTGAATTAAAAGCACATATTGCAAAGAAGCTTGGCTCGGATAAGGCGAAGCTGTACTTTTATTACGTGAACCGGTTTCTGAGTCAGAGGCTGAGCAAGACTGAATATGATAAGTTGTGTTATCGTGTACTTGGGAGGGAGAACATTCCGTTACACAATCATTTTATAAGGGCAGTTTTGAAGAATGTTTGCCTAGCTAAGATCCCACCACCACAAGTCCAGCCATCAGATCCTCCGAAATCGGGATCACACGTTAATGACATATCTCCTGGTAGAGAAGATGGAAATGAACACAATGTTGCTAACTTCCAAAATCAACCGGTTTGGTCAAACAGGGTTTTTCTGGTTTCTCCACGTAAGGCTAGGTCTGGAATGCGTGATCGGAAGCTTAAAGATAGGCCAAGCCCTCTAGGACCCAATGGGAAAGTTGATTCCGTAGTTCATCAATCCACACCTACAGAAGACAGTAGTGTTAGTAAGATTGACACGGAGAATGGAACTCTTGCACCATGTGATTATCAGAGGCCAATACAGAATCTCCAACCAGTGGCTGAGCAGCTCCGTGAGAATGAAATGGGGGATGCTATTCCGAGGCCTGCTAAAAAATCAAGAATATACGGCGAAGGGCCAACCGAAATATCAATTGTCGAAAATGGTGAAGTAGCAGTGGAGCAGCTAAACCACCTCAGTTTCTGTAGAAGTCCCCTGATAGCACCACTTGGGATCCCGTATTGGTCTGCAAGTGTAGGTGGGGCCCACAAAGCAATGGCAGTGAGTAGTAGCAGTAGTAGTGGTTTTGTTAGTTGTTGTGACTGTGGTAGGTTGTCTGATACTGTTACATTGAAAAGTCGCATGGAGCAGATTGCCAAAGTACAGGGTCTTGGAGGAGTTTCTATGGAATGTGCGAATACGTTAAATAATGCGTTGGATGTGTACTTGAAACGGTTGATCAGGTCTTGTGTTGATTTAGTGGGAGCTAGGTCTAAAAATGAGCCGAGTAAACCCCCGGTCTCAAAGCAGCGGATTCAGGGTAAAGTCGTCAATGGCATGTGGCCAAATAATCATTTACATGCGCAGAGTGTTAGTCGGCCAGAAGAACCCGAGCCTGAACACAGACCACCATGCTCAGTATCTTCACATGATTTTATAGTTGCCATGGAGCTAAATCCACAGCAACTTGGAGAAGATTGGCCACTACTTTTAGAAATTTTTTCCATGCGAATCCTTTGA 1263 0.4497 MQPRQSSRIDLGELKAHIAKKLGSDKAKLYFYYVNRFLSQRLSKTEYDKLCYRVLGRENIPLHNHFIRAVLKNVCLAKIPPPQVQPSDPPKSGSHVNDISPGREDGNEHNVANFQNQPVWSNRVFLVSPRKARSGMRDRKLKDRPSPLGPNGKVDSVVHQSTPTEDSSVSKIDTENGTLAPCDYQRPIQNLQPVAEQLRENEMGDAIPRPAKKSRIYGEGPTEISIVENGEVAVEQLNHLSFCRSPLIAPLGIPYWSASVGGAHKAMAVSSSSSSGFVSCCDCGRLSDTVTLKSRMEQIAKVQGLGGVSMECANTLNNALDVYLKRLIRSCVDLVGARSKNEPSKPPVSKQRIQGKVVNGMWPNNHLHAQSVSRPEEPEPEHRPPCSVSSHDFIVAMELNPQQLGEDWPLLLEIFSMRIL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0048 420 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 417 - -
Lal10g0048 420 MobiDBLite consensus disorder prediction 155 173 - -
Lal10g0048 420 MobiDBLite consensus disorder prediction 132 146 - -
Lal10g0048 420 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 5 335 IPR024738 GO:0070461
Lal10g0048 420 MobiDBLite consensus disorder prediction 131 173 - -
Lal10g0048 420 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 417 IPR024738 GO:0070461
Lal10g0048 420 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0048 Lal-Chr10 588836 590098 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0048 - - gmx:100803746 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1095 25 14260372 14261643 Lal10g0048 10 588836 590098 LSH
Lal10g0048 10 588836 590098 Lal17g0272 17 1704959 1706227 PCT
Lal10g0048 10 588836 590098 Lal4g0254 4 1642851 1644113 PCT
Lal17g0272 17 1704959 1706227 Lal10g0048 10 588836 590098 PCT
Lal4g0254 4 1642851 1644113 Lal10g0048 10 588836 590098 PCT