Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2197 ATGGGGTTGTTTTCTGGGATATTTCTGGGGATGGTACTGGGCATAGCATTGATGGCTGCGTGGCAACGCATGATGACGTACCGTAGCGCCAAGAGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATCTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCCATATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATTAGAGAATCTGTTGAGCCACTATTGGAAGAGTACAGACCAACTGGAATTTCTTCATTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGCGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCCTGCATTTCTGCTGTTGTCGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACGGCACTGCCTGGAATTTCTGATATGATTGATGATATGGTGAACTCAATCGTTACCGATACGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGACTGTAATTAAAGCGAATGACCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGTATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTGTTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCACTTAATGACATGGAACCAGAAACTGAAAAGGAGTTTGAATTGAGGATGCTGTCATCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACAATGAAGATCTTTTATCACCAATTTAACAAGGAAGAACAGTTAGTTGCACTAGAAGCAGAGAAAAATATACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGCATCGGCAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTGCTACTGGTGCTGGACTTGTGGGGACTGGAATTGGTGCAGGAGCTGGATTTGTTGGGACTGGAATTGGTACTGGAGCCGGGTTTGTTGGCAGCGGCATCGGTGCTGGAGTTGGTTTTGTCGGCAGCGGTCTTGGTGCTGTTGGTAGTGGACTGAGCAGAGCAGGAAAGTTCATGGGAAGGACAATCACAGGCCAAGGTAGTTCCAGAAGGAGTGGTTCAAATACTCCTGTCAATGTGGAGGAGACTGGTGGTGGTGCAAAACCGCTGCAGCAGTAA 1608 0.4378 MGLFSGIFLGMVLGIALMAAWQRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPEWISFPIYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPTGISSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNSIVTDTLQWPHRIVVPLGGIPVDTSELELKPQGTLRVTVIKANDLKNMEMIGKSDPYAVLYIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDMEPETEKEFELRMLSSLDTLKVKDKKDRGTITMKIFYHQFNKEEQLVALEAEKNILEERKKLKEEGVIGTTMDALDGAASAVGSGVGMVGTGVATGAGLVGTGIGAGAGFVGTGIGTGAGFVGSGIGAGVGFVGSGLGAVGSGLSRAGKFMGRTITGQGSSRRSGSNTPVNVEETGGGAKPLQQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2197 535 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 247 IPR039010 -
Gso9g2197 535 ProSiteProfiles C2 domain profile. 246 362 IPR000008 -
Gso9g2197 535 PRINTS C2 domain signature 280 292 IPR000008 -
Gso9g2197 535 PRINTS C2 domain signature 305 318 IPR000008 -
Gso9g2197 535 PRINTS C2 domain signature 327 335 IPR000008 -
Gso9g2197 535 CDD C2 265 359 - -
Gso9g2197 535 Coils Coil 390 417 - -
Gso9g2197 535 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 479 - -
Gso9g2197 535 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 468 525 - -
Gso9g2197 535 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 248 IPR031468 GO:0008289
Gso9g2197 535 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 468 525 IPR045050 GO:0008289
Gso9g2197 535 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 479 IPR045050 GO:0008289
Gso9g2197 535 MobiDBLite consensus disorder prediction 505 524 - -
Gso9g2197 535 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 263 390 IPR035892 -
Gso9g2197 535 MobiDBLite consensus disorder prediction 504 535 - -
Gso9g2197 535 Pfam C2 domain 263 359 IPR000008 -
Gso9g2197 535 SMART C2_3c 264 361 IPR000008 -
Gso9g2197 535 Coils Coil 533 535 - -
Gso9g2197 535 Gene3D C2 domain 258 417 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2197 Gso-Chr9 46318150 46325193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2197 248 352 Lipid Metabolism Gene Families AT3G61300 33.962 1.38e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2197 - - gmx:100785209 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2043 18 53270783 53284419 Gso9g2197 9 46318150 46325193 GST
Gso9g2197 9 46318150 46325193 Gso7g0710 7 7705408 7716259 PCT
Gso9g2197 9 46318150 46325193 Gso3g0165 3 2110544 2121334 PCT
Gso7g0710 7 7705408 7716259 Gso9g2197 9 46318150 46325193 PCT
Gso3g0165 3 2110544 2121334 Gso9g2197 9 46318150 46325193 PCT