Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2043 ATGGGGTTGTTTTCTGGGATTTTTCTGGGGATGGTACTCGGCATTGCATTGATGGCTGCGTGGCAACGTATGATGACGTACCGTAGCGCCAAGAGGATTGCAAAGGCAGTTGACATTAAGCTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATTAGAGAATCTGTTGAACCGATATTGGAAGAGTACAGACCAGCTGGAATTTCTTCCTTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCGTCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGACGAGATTCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCCGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACGGCACTTCCTGGAATTTCAGATATGATTGATGATATGGTGAACACAATCGTTACCGATACGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACACTTAGAGCAACTGTAATTAAAGCGAATGACCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGTATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTATTTGACTTGATTGCGGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTGCCACTTAATGACTTGGAACCAGAAACTGAAAAGGAGTTTGAATTGAGGCTGCTGTCATCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACCATAAAGATCTTTTATCACCAATTTAACAAGGAAGAACAGTTGGTTGCACTAGAAGCAGAGAAAAATATACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGCCTCGGCAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTGCTACTGGTGCTGGACTTGTGGGGACTGGAATTGGTGCGGGAGCTGGACTTGTGGGGACTGGAATTGGTGCGGGAGCTGGACTTGTTGGCAGTGGAATTGGTGTTGGAGCCGGTCTTGTTGGCAGTGGCATCGGTGCCGGAGTTGGTTTTGTCGGCAGTGGTCTTGGTGCTGTTGGTAGTGGACTGAGCAGAGCAGGAAAGTTCATGGGAAGGACAATCACTGGGCAAGGTAGTTCTAGAAGGAGCGGCTCAAATACTCCTGTCAATGTGGAGGAGACTGGTGGTGGTGCAAAACCTCTGCAGTAA 1638 0.4438 MGLFSGIFLGMVLGIALMAAWQRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPEWISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPILEEYRPAGISSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNTIVTDTLQWPHRIVVPLGGIPVDTSELELKPQGTLRATVIKANDLKNMEMIGKSDPYAVLYIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDLEPETEKEFELRLLSSLDTLKVKDKKDRGTITIKIFYHQFNKEEQLVALEAEKNILEERKKLKEEGVIGTTMDALDGAASAVGSGVGMVGTGVATGAGLVGTGIGAGAGLVGTGIGAGAGLVGSGIGVGAGLVGSGIGAGVGFVGSGLGAVGSGLSRAGKFMGRTITGQGSSRRSGSNTPVNVEETGGGAKPLQ* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2043 545 CDD C2 265 359 - -
Gso18g2043 545 Coils Coil 390 417 - -
Gso18g2043 545 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 479 536 - -
Gso18g2043 545 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 478 - -
Gso18g2043 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 263 390 IPR035892 -
Gso18g2043 545 Gene3D C2 domain 258 417 IPR035892 -
Gso18g2043 545 ProSiteProfiles C2 domain profile. 246 362 IPR000008 -
Gso18g2043 545 MobiDBLite consensus disorder prediction 515 545 - -
Gso18g2043 545 PRINTS C2 domain signature 280 292 IPR000008 -
Gso18g2043 545 PRINTS C2 domain signature 305 318 IPR000008 -
Gso18g2043 545 PRINTS C2 domain signature 327 335 IPR000008 -
Gso18g2043 545 Pfam C2 domain 263 359 IPR000008 -
Gso18g2043 545 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 478 IPR045050 GO:0008289
Gso18g2043 545 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 479 536 IPR045050 GO:0008289
Gso18g2043 545 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 247 IPR039010 -
Gso18g2043 545 MobiDBLite consensus disorder prediction 516 535 - -
Gso18g2043 545 SMART C2_3c 264 361 IPR000008 -
Gso18g2043 545 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 248 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2043 Gso-Chr18 53270783 53284419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2043 248 352 Lipid Metabolism Gene Families AT3G61300 33.962 3.91e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2043 - - gmx:100783641 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2043 18 53270783 53284419 Gso9g2197 9 46318150 46325193 GST
Gso18g2043 18 53270783 53284419 Gso7g0710 7 7705408 7716259 PCT
Gso18g2043 18 53270783 53284419 Gso3g0165 3 2110544 2121334 PCT
Gso7g0710 7 7705408 7716259 Gso18g2043 18 53270783 53284419 PCT
Gso3g0165 3 2110544 2121334 Gso18g2043 18 53270783 53284419 PCT