Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0165 ATGGGTTTGTTTTCTGGGATTTTTATGGGGGTGTTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAGGTACCGAAGTGCCAAACGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGATAATTTGCCTGAGTGGATATCTTTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACCTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCGAAAATTGAAGGTATTCGTGTTCAGAGCTTAACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATCCCTATACAGTTGAAGGATCTACAGGTTTTCACCATTGTCCGTGTGATATTTCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTTGTCAAAGCAACTGCTTTAAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGCATATTCGACCATTATTTAAGTATAAAACCAAGGTTATTGATAACAACCTGAATCCTATTTGGAATGAGAAATTCGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTTGAGGTTCTTGATAAAGACATTGGGCAAGATAAGCGGTTGGGAATAGCACAGTTACCCCTTATTGGTCTAGAAATACAAACTGAAAAGGAGATCGAATTGAGGCTGCTGCCCTCACTTGATACACTTAAGGTGAAAGATAAGAAAGATCGAGGAACCTTAACAGTGAAGGTCATGTATTATCAGTTTAACAAGGAAGAGCAGCTGGTTGCGCTAGAAGCAGAAAAGAAGATACTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGAGTGATAGGAAGCACAATGGATGCACTAGATGGAGCAGTATCAGTGGTAGGGTCTGGTGTTGGACTGGTTGGTACTGGTGTTGTTGCAGGTGCCGGTCTTGTGGGAAGTGGCGTCGTCGCGGGTGCTGGGCTTGTGGGAAGTGGCATTGGTGCTGGAGCCGGGCTGGTTGGAAGCGGCATCGGTGCTGGAGTTGGCATTGTCGGGAGCGGTCTTGGAGCCGTTGGTAGTGGACTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGCTCCAGAAAGAGTGGTTCTTCGACTCCAGTCAACAATGCTCAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1608 0.4453 MGLFSGIFMGVLFGIALMAGWARMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVIDNNLNPIWNEKFELIAEDKETQSLILEVLDKDIGQDKRLGIAQLPLIGLEIQTEKEIELRLLPSLDTLKVKDKKDRGTLTVKVMYYQFNKEEQLVALEAEKKILEERKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGVVAGAGLVGSGIGAGAGLVGSGIGAGVGIVGSGLGAVGSGLSKAGKFMGRTITGHSGSRKSGSSTPVNNAQENGGGAKPL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0165 535 MobiDBLite consensus disorder prediction 509 527 - -
Gso3g0165 535 Gene3D C2 domain 259 417 IPR035892 -
Gso3g0165 535 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 468 530 IPR045050 GO:0008289
Gso3g0165 535 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 469 IPR045050 GO:0008289
Gso3g0165 535 Pfam C2 domain 264 356 IPR000008 -
Gso3g0165 535 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 468 530 - -
Gso3g0165 535 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 469 - -
Gso3g0165 535 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Gso3g0165 535 PRINTS C2 domain signature 281 293 IPR000008 -
Gso3g0165 535 PRINTS C2 domain signature 306 319 IPR000008 -
Gso3g0165 535 PRINTS C2 domain signature 328 336 IPR000008 -
Gso3g0165 535 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Gso3g0165 535 MobiDBLite consensus disorder prediction 507 535 - -
Gso3g0165 535 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Gso3g0165 535 SMART C2_3c 265 362 IPR000008 -
Gso3g0165 535 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Gso3g0165 535 CDD C2 266 360 - -
Gso3g0165 535 Coils Coil 391 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0165 Gso-Chr3 2110544 2121334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0165 249 350 Lipid Metabolism Gene Families AT3G61300 33.010 5.37e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0165 - - gmx:100798484 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0710 7 7705408 7716259 Gso3g0165 3 2110544 2121334 GST
Gso18g2043 18 53270783 53284419 Gso3g0165 3 2110544 2121334 PCT
Gso9g2197 9 46318150 46325193 Gso3g0165 3 2110544 2121334 PCT
Gso3g0165 3 2110544 2121334 Gso18g2043 18 53270783 53284419 PCT
Gso3g0165 3 2110544 2121334 Gso9g2197 9 46318150 46325193 PCT