Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1113 ATGGGTTCTTCTGGGTTTTCATCATCTTCTACTGCAGAGGAAGTTACTCAAGGAATCAATGGGAGTGGCCTAACTGCAATTGTCACAGGAACAACCCATGGTATTGGTACTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTACATGTGATTATGGCTGCGAGAGATGTGATTGCTGCAAAAGCTGTCAAAGAAGCAATACTTAAAGAGATTCCCACAGCCAAAGTTGATGCCATGGAATTAGACCTTAGCTCAATGACTTCCGTCAGAAAGTTTGCATTAGAGTATATTTCATCTGGTCTTCCATTGAACATCTTGATAAACAATGCGGGAATAAGTGCATTCCCTTTCACGCTGTCCAAAGACAACATCGAACTACAATTTGCCACAAATCACTTAGGTCATTTTCTTTTAACAAATCTTTTGTTGGATACTTTGAAGAAAACTGCAAGTGAAAGCAAGAAAGAAGGAAGAATTATTATTGTCTCCTCTGACGGTCACCAATATACATATCCTGAAGGAATTCTTTTTGATAAAATTAATGATGAATCAAGTTACCAGAAGTGGCATGCATATGGGCAATCAAAGCTTGCCAACATTTTACATGCCAACGAACTTACAAGACTTCTTAAAGAAGATGGGATAGATAATATTACTGCAAATTCTCTTCATCCAGGAGCTATTATGGACACCAATATTTATAAACCAGAGATTAATGGCCCTGTGCCAACTGATCTAATTAATAGGCTAGGGAGTTTTCTGCTAAAAAATATCCAGCAGGGAGCAGCAACAACATGCTATGTAGCGTTGCACCCACAAGTGAGGGGAATAAGCGGCGAGTATTTTTCAGATAATAATCTGGCTAAAGCGAGTTCACTGGCAAAGGACACTAATTTGGCTAAGAAACTTTGGGATTTCAGCATGAAAACAATTGATTACAATACCCATGAGCAAATCTGA 960 0.3906 MGSSGFSSSSTAEEVTQGINGSGLTAIVTGTTHGIGTETARVLALRGVHVIMAARDVIAAKAVKEAILKEIPTAKVDAMELDLSSMTSVRKFALEYISSGLPLNILINNAGISAFPFTLSKDNIELQFATNHLGHFLLTNLLLDTLKKTASESKKEGRIIIVSSDGHQYTYPEGILFDKINDESSYQKWHAYGQSKLANILHANELTRLLKEDGIDNITANSLHPGAIMDTNIYKPEINGPVPTDLINRLGSFLLKNIQQGAATTCYVALHPQVRGISGEYFSDNNLAKASSLAKDTNLAKKLWDFSMKTIDYNTHEQI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1113 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Gso9g1113 319 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Gso9g1113 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 287 IPR036291 -
Gso9g1113 319 Gene3D - 19 315 - -
Gso9g1113 319 Pfam short chain dehydrogenase 25 174 IPR002347 -
Gso9g1113 319 CDD retinol-DH_like_SDR_c_like 23 304 - -
Gso9g1113 319 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Gso9g1113 319 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Gso9g1113 319 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Gso9g1113 319 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1113 Gso-Chr9 32116056 32122208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1113 27 238 Acyl Lipid Metabolism Gene Families AT3G55310 29.224 5.09e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1113 - - cam:101490020 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1494 16 35171486 35177681 Gso9g1113 9 32116056 32122208 GST
Gso20g1294 20 42980780 42986035 Gso9g1113 9 32116056 32122208 PCT
Gso10g2083 10 47799971 47805149 Gso9g1113 9 32116056 32122208 PCT