Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1294 ATGTGGCTATTCGGCAGAAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCAGAGCAAGTCACTGAAGGAATTGATGGAACTGGTTTCACTGCCATTGTCACAGGGGCATCCAGTGGTATTGGCACTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAACAATACTCAAGGAGATTCCCTCCGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCGATGAAGTCTGTCAGGAAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACTATTAAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACCACCAATCTTTTCCGGCATAACAGTGCAGTGAATGGTCTAATTAATGTGATTGGGAGACTGGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTAAAGGGAATCAGTGGCAAGTATTTTTCAGACAGTAATTTGGCAAAAACAACCGCACAGGGGACTGACTCTGATTTGGCCAAGAAACTATGGGATTTCAGCATGGATTTGACTAAGTAA 942 0.4119 MWLFGRKGASGFSSSSTAEQVTEGIDGTGFTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMLAAKDVKETILKEIPSAKVDAMELDLSSMKSVRKFASEFKSSGLPLNILINNAGIMACPFSLSKDKIELQFATNHIGHFLLTNLLLDTIKKTSRESKKEGRIVNVSSEAHRFAYSEGICFDKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGTITTNLFRHNSAVNGLINVIGRLVLKNVQQGAATTCYVALHPQVKGISGKYFSDSNLAKTTAQGTDSDLAKKLWDFSMDLTK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1294 313 CDD retinol-DH_like_SDR_c_like 31 305 - -
Gso20g1294 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Gso20g1294 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Gso20g1294 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Gso20g1294 313 Pfam short chain dehydrogenase 31 178 IPR002347 -
Gso20g1294 313 Gene3D - 23 313 - -
Gso20g1294 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Gso20g1294 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Gso20g1294 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Gso20g1294 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1294 Gso-Chr20 42980780 42986035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1294 31 286 Acyl Lipid Metabolism Gene Families AT3G55290 29.964 4.49e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1294 - - gmx:100796920 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1294 20 42980780 42986035 Gso10g2083 10 47799971 47805149 GST
Gso20g1294 20 42980780 42986035 Gso16g1494 16 35171486 35177681 PCT
Gso20g1294 20 42980780 42986035 Gso9g1113 9 32116056 32122208 PCT