Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1494 ATGGGTTCTTCTGGGTTTTCATCATCTTCCACTGCAGAGGAAGTTACTCAAGGAATCGATGGGAGTGGCCTCACTGCAATTGTCACAGGAACAACCCATGGTATTGGCACTGAGACGGCAAGAGTTCTTGCTTTGCGTGGTGTACATGTGATTATGGCAGCCAGAGATGTGATTGCAGCAAAAACTATCAAAGAGGTAATACTTGAAGAGATTCCCACAGCCAAAGTTGATGCCATGGAGTTAGATCTTAGCTCAATGGCATCCGTTAGGAAGTTTGCATCGGAGTTCATTTCATTTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATAAGCGCATTCCCTTTCACGCTGTCCAAAGACAACATCGAACTACTATTTGCTACAAATCACTTAGGTCATTTTCTTTTAACAAATCTTTTGTTGGATACTATGAAGAAAACTGCAAGTGAAAGCAAGAAAGAAGGAAGAATTATTAATGTTTCCTCTGATGGTCACCAATATACATATCCTGAAGGAATCCTTTTTGATAAAATTAATGACGAATCAAGTTACCAGAAGTGGCGTGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAAGAAGATGGGATAGATATTACTGCAAATTCTCTTCATCCAGGAGCTATTATCACCAATATTTATAAACCAGAGCTTAGTGGCCCAGTGCCAACTGATCTAATGAATATGCTTGGAGATTATCTGCTTAAAAGTATCCCGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGGATTAGTGGCGAGTATTTTTCAGATAGTAATCTGGCTAAAGCAAGCTCACTGGCAACAGACACTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAAAATAATTGACTACAATGCCCATGATTCATGA 951 0.4017 MGSSGFSSSSTAEEVTQGIDGSGLTAIVTGTTHGIGTETARVLALRGVHVIMAARDVIAAKTIKEVILEEIPTAKVDAMELDLSSMASVRKFASEFISFGLPLNILINNAGISAFPFTLSKDNIELLFATNHLGHFLLTNLLLDTMKKTASESKKEGRIINVSSDGHQYTYPEGILFDKINDESSYQKWRAYGQSKLANILHANELARLLKEDGIDITANSLHPGAIITNIYKPELSGPVPTDLMNMLGDYLLKSIPQGAATTCYVALHPQVKGISGEYFSDSNLAKASSLATDTDLAKKLWDFSMKIIDYNAHDS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1494 316 CDD retinol-DH_like_SDR_c_like 23 302 - -
Gso16g1494 316 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 310 - -
Gso16g1494 316 Gene3D - 16 313 - -
Gso16g1494 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 286 IPR036291 -
Gso16g1494 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Gso16g1494 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Gso16g1494 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Gso16g1494 316 Pfam short chain dehydrogenase 25 174 IPR002347 -
Gso16g1494 316 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Gso16g1494 316 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Gso16g1494 316 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Gso16g1494 316 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Gso16g1494 316 PANTHER RETINOL DEHYDROGENASE 2 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1494 Gso-Chr16 35171486 35177681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1494 27 177 Acyl Lipid Metabolism Gene Families AT3G55310 33.121 5.20e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1494 - - cam:101490020 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1494 16 35171486 35177681 Gso9g1113 9 32116056 32122208 GST
Gso20g1294 20 42980780 42986035 Gso16g1494 16 35171486 35177681 PCT
Gso10g2083 10 47799971 47805149 Gso16g1494 16 35171486 35177681 PCT