Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2083 ATGTGGCCATTCAGCAGAAAAGGGTCTTCTGGGTTTTCATCATCATCCACTGCAGAGCAAGTCACTGAAGGAATTGATGGAACTGGTCTCACTGCCATTGTCACAGGGGCATCCAGTGGTATTGGAACTGAGACTTCACGTGTTCTTGCTTTGCGCGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAAAAATACTTAAGGAGATTCCCTCCGCTAAAGTTGATGCCATGGAGTTAGATCTCGGTTCGATGGAGTCTGTCAAGAAATTTGCATCAGCGTTTAAGTCGTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATTATGGCATGCCCTTTCAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCAGAGGCTCACCGATTTGCATATTCTGAAGGAATCCGTTTTAACAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGACATAACAGTGCAGTGAATGGTCTAATTAATGTGATTGGGAAACTGGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATCAGTGGCAAATATTTTTCAGACAGTAATGTGGCCAATACAACCGCACAGGGGACTGACGCTGATTTGGCCAAGAAACTATGGGATTTCAGCATGAATTTGACCAAGTAA 942 0.4151 MWPFSRKGSSGFSSSSTAEQVTEGIDGTGLTAIVTGASSGIGTETSRVLALRGVHVIMGVRNMLAAKDVKEKILKEIPSAKVDAMELDLGSMESVKKFASAFKSSGLPLNILINNAGIMACPFSLSKDKIELQFATNHIGHFLLTNLLLDTIEKTSRESKKEGRIVNVSSEAHRFAYSEGIRFNKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGTITTNLFRHNSAVNGLINVIGKLVLKNVQQGAATTCYVALHPQVKGISGKYFSDSNVANTTAQGTDADLAKKLWDFSMNLTK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2083 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Gso10g2083 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Gso10g2083 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Gso10g2083 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Gso10g2083 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Gso10g2083 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Gso10g2083 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Gso10g2083 313 Pfam short chain dehydrogenase 31 177 IPR002347 -
Gso10g2083 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
Gso10g2083 313 Gene3D - 22 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2083 Gso-Chr10 47799971 47805149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2083 31 286 Acyl Lipid Metabolism Gene Families AT3G55310 29.670 1.14e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2083 - - gmx:100784001 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2083 10 47799971 47805149 Gso10g2083 10 47799971 47805149 ECH
Gso20g1294 20 42980780 42986035 Gso10g2083 10 47799971 47805149 GST
Gso10g2083 10 47799971 47805149 Gso16g1494 16 35171486 35177681 PCT
Gso10g2083 10 47799971 47805149 Gso9g1113 9 32116056 32122208 PCT