Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1028 ATGAAAACCCTTAACAAAGCCTCATTACTCTTATTCCCTCTCTTGTCCCTTTCCTTATTTATCAACCATTCCCATGCAGCAGGAATCGCTGTGTACTGGGGCCAAAACGGTGGAGAAGGCACCTTAGCAGAAGCTTGCAACACAGGAAACTACCAATATGTGAACATAGCCTTCTTGTCCACTTTTGGAAATGGCCAAACCCCACAACTCAACCTTGCTGGTCATTGTGACCCTAACAACAATGGTTGCACAGGGTTGAGCAGTGATATCAATACTTGCCAAGACCTTGGCATCAAAGTGTTGCTCTCTCTTGGAGGTGGTGCTGGAAGCTACTCCCTCAGCTCAGCTGATGATGCCACACAACTTGCAAACTACCTCTGGGAGAATTTCCTTGGAGGCCAAACTGGATCAGGGCCATTAGGTGATGTTATCTTGGATGGCATTGACTTTGACATTGAGTCTGGTGGGAGTGACCATTATGATGACCTAGCCAGGGCACTAAACAGCTTCAGCTCACAGAGTAAGGTGTACTTGTCCGCAGCCCCACAGTGCATAATCCCTGATGCACACTTGGATGCTGCCATCCAAACTGGGCTCTTTGACTATGTGTGGGTTCAGTTCTACAACAACCCTTCATGCCAATACTCCAGTGGAAACACCAACGATTTGATCAATTCATGGAACCAGTGGATCACAGTGCCAGCTTCTCTAGTCTTCATGGGGCTTCCTGCATCTGAAGCAGCTGCTCCAAGTGGTGGCTTTGTGCCTGCTGATGTGTTAACCTCTCAGATTCTTCCTGTGATTAAACAGTCTTCAAATTATGGTGGAGTCATGCTTTGGGACAGATTCAATGATGTCCAAAATGGTTATAGTAATGCTATTATTGGAAGTGTTAATTAA 900 0.4611 MKTLNKASLLLFPLLSLSLFINHSHAAGIAVYWGQNGGEGTLAEACNTGNYQYVNIAFLSTFGNGQTPQLNLAGHCDPNNNGCTGLSSDINTCQDLGIKVLLSLGGGAGSYSLSSADDATQLANYLWENFLGGQTGSGPLGDVILDGIDFDIESGGSDHYDDLARALNSFSSQSKVYLSAAPQCIIPDAHLDAAIQTGLFDYVWVQFYNNPSCQYSSGNTNDLINSWNQWITVPASLVFMGLPASEAAAPSGGFVPADVLTSQILPVIKQSSNYGGVMLWDRFNDVQNGYSNAIIGSVN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1028 299 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Gso9g1028 299 PANTHER ENDOCHITINASE 14 298 - -
Gso9g1028 299 Pfam Glycosyl hydrolases family 18 29 285 IPR001223 GO:0005975
Gso9g1028 299 Gene3D Glycosidases 27 297 - -
Gso9g1028 299 PANTHER ACIDIC ENDOCHITINASE 14 298 - -
Gso9g1028 299 CDD GH18_hevamine_XipI_class_III 27 296 IPR045321 -
Gso9g1028 299 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 299 IPR001223 GO:0005975
Gso9g1028 299 SUPERFAMILY (Trans)glycosidases 25 293 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1028 Gso-Chr9 29426807 29428511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1028 3 298 Glycoside Hydrolase AT5G24090 56.856 1.49e-121 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1028 K01183 - gmx:547454 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1028 9 29426807 29428511 Gso9g1028 9 29426807 29428511 ECH
Gso16g1417 16 34155589 34157150 Gso9g1028 9 29426807 29428511 GST
Gso9g1028 9 29426807 29428511 Gso20g1325 20 43295506 43296719 PCT
Gso9g1028 9 29426807 29428511 Gso10g2034 10 47367807 47368959 PCT
Gso20g1325 20 43295506 43296719 Gso9g1028 9 29426807 29428511 PCT
Gso10g2034 10 47367807 47368959 Gso9g1028 9 29426807 29428511 PCT