Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1325 ATGGCAGCCCTCAAACAAGTTTCATCCCTCTTACTATTCCCTTTGTTTCTCATTTTTTCCCTATTCAAATCCTCTCATGCTGGTGGGATTGCAGTCTATTGGGGTCAAAACGGCAATGAAGGCTCCTTGGAAGAAGCTTGCAACACTGACAACTACCAATATGTGAACATAGGTTTCTTGAACGTTTTTGGCAACAACCAAACCCCACAACTAAACCTTGCAGGCCATTGTAATCCAAGCACCAACGAGTGCACCGGATTAAGCAATGACATCAATGTATGCCAAAGCAAAGGAATCAAAGTGTTTCTCTCCCTTGGAGGCGCCGTTGGAAGCTACTCTCTCAACTCGGCTTCTGAAGCCACAGACCTTGCAGCGTACCTATGGGATAACTTCCTTGGAGGACAATCAAATTCACGTCCATTTGGTGATGCTGTGTTGGATGGCATAGACTTTGACATCGAAGATGGTTCAGGCCAATACTATGGTGACCTTGCAAGAGAACTTGATGCTTATAGCCAACAAAGAAAAGTGTACTTGGCTGCTGCACCACAATGTCCATACCCTGATGCTCACTTGGATTCGGCTATTGCAACTGGCCTTTTTGATTATGTGTGGGTTCAGTTCTACAACAACCCTCAATGCCATTATACTTCAGGGAACATTGACAACCTAGTTAGTGCATGGAACCAGTGGACCTCAAGTGAAGCTAAACAAGTGTTTTTGGGGCTACCAGCATCTGAGGCAGCTGCTCCAAGTGGTGGTTATATTCCTCCTGATGTGCTAATTTCTGATGTTCTTCCTGCTATCAGCGGCTCTCCCAAGTACGGTGGAGTCATGATTTGGGACAGATTCAATGACGGCCAAAGCGGATACAGTGATGCTATTAAGGCCAGTGTTTAA 900 0.4544 MAALKQVSSLLLFPLFLIFSLFKSSHAGGIAVYWGQNGNEGSLEEACNTDNYQYVNIGFLNVFGNNQTPQLNLAGHCNPSTNECTGLSNDINVCQSKGIKVFLSLGGAVGSYSLNSASEATDLAAYLWDNFLGGQSNSRPFGDAVLDGIDFDIEDGSGQYYGDLARELDAYSQQRKVYLAAAPQCPYPDAHLDSAIATGLFDYVWVQFYNNPQCHYTSGNIDNLVSAWNQWTSSEAKQVFLGLPASEAAAPSGGYIPPDVLISDVLPAISGSPKYGGVMIWDRFNDGQSGYSDAIKASV* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1325 299 PANTHER ACIDIC ENDOCHITINASE 12 299 - -
Gso20g1325 299 CDD GH18_hevamine_XipI_class_III 28 297 IPR045321 -
Gso20g1325 299 PANTHER ENDOCHITINASE 12 299 - -
Gso20g1325 299 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Gso20g1325 299 SUPERFAMILY (Trans)glycosidases 25 295 IPR017853 -
Gso20g1325 299 Gene3D Glycosidases 28 299 - -
Gso20g1325 299 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 299 IPR001223 GO:0005975
Gso20g1325 299 Pfam Glycosyl hydrolases family 18 30 286 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1325 Gso-Chr20 43295506 43296719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1325 1 299 Glycoside Hydrolase AT5G24090 57.426 2.48e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1325 K01183 - gmx:100810929 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1325 20 43295506 43296719 Gso10g2034 10 47367807 47368959 GST
Gso16g1417 16 34155589 34157150 Gso20g1325 20 43295506 43296719 PCT
Gso9g1028 9 29426807 29428511 Gso20g1325 20 43295506 43296719 PCT
Gso20g1325 20 43295506 43296719 Gso16g1417 16 34155589 34157150 PCT
Gso20g1325 20 43295506 43296719 Gso9g1028 9 29426807 29428511 PCT