Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1417 ATGAAAACCCTTAACAAAGCCTCACTTATTTTATTCCCTCTCTTGTTCCTTTCCCTATTCAAGCATTCCCATGCTGCAGGAATCGCTATCTACTGGGGCCAAAACGGTGGAGAAGGCACCTTAGCAGAAGCTTGCAACACTAGAAACTACCAATATGTGAACATAGCCTTCTTGTCCACTTTTGGCAACGGCCAAACTCCACAACTCAACCTTGCAGGTCATTGTGACCCCAACAACAATGGCTGCACTGGGTTGAGCAGTGACATCAAAACTTGCCAAGACCTTGGCATCAAAGTGTTGCTCTCCCTAGGTGGTGGTGCTGGAAGCTACTCCCTCAGCTCAGCTGATGATGCCACTCAACTTGCAAACTACCTCTGGCAGAATTTCCTTGGAGGTCAAACCGGATCAGGGCCATTAGGTAATGTTATATTGGATGGCATTGACTTTGACATTGAATCTGGTGGGAGTGACCATTATGATGACCTAGCCAGGGCATTAAATAGCTTCAGCTCACAAAGGAAGGTGTACTTGTCTGCAGCCCCACAGTGCATAATCCCTGATGCTCACTTGGATAGAGCCATCCAAACTGGGCTTTTTGACTATGTGTGGGTTCAATTCTACAACAACCCTTCATGCCAATACTCCAGTGGAAACACCAACAATTTGATCAATTCATGGAACCAATGGATCACAGTGCCAGCTTCTCAAATCTTCATGGGGCTTCCTGCATCTGAGGCAGCTGCTCCAAGTGGTGGCTTTGTGCCCGCTGATGTGTTGACTTCTCAGGTTCTTCCTGTGATTAAACAGTCTTCAAAGTATGGTGGAGTCATGCTCTGGAACAGATTCAATGATGTCCAAAATGGTTATAGTAATGCTATTATTGGAAGTGTTTAA 894 0.4575 MKTLNKASLILFPLLFLSLFKHSHAAGIAIYWGQNGGEGTLAEACNTRNYQYVNIAFLSTFGNGQTPQLNLAGHCDPNNNGCTGLSSDIKTCQDLGIKVLLSLGGGAGSYSLSSADDATQLANYLWQNFLGGQTGSGPLGNVILDGIDFDIESGGSDHYDDLARALNSFSSQRKVYLSAAPQCIIPDAHLDRAIQTGLFDYVWVQFYNNPSCQYSSGNTNNLINSWNQWITVPASQIFMGLPASEAAAPSGGFVPADVLTSQVLPVIKQSSKYGGVMLWNRFNDVQNGYSNAIIGSV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1417 297 Gene3D Glycosidases 26 296 - -
Gso16g1417 297 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Gso16g1417 297 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Gso16g1417 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Gso16g1417 297 PANTHER ENDOCHITINASE 13 297 - -
Gso16g1417 297 SUPERFAMILY (Trans)glycosidases 24 292 IPR017853 -
Gso16g1417 297 PANTHER ACIDIC ENDOCHITINASE 13 297 - -
Gso16g1417 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1417 Gso-Chr16 34155589 34157150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1417 3 297 Glycoside Hydrolase AT5G24090 58.194 8.05e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1417 K01183 - gmx:100815291 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1417 16 34155589 34157150 Gso16g1417 16 34155589 34157150 ECH
Gso16g1417 16 34155589 34157150 Gso9g1028 9 29426807 29428511 GST
Gso16g1417 16 34155589 34157150 Gso20g1325 20 43295506 43296719 PCT
Gso16g1417 16 34155589 34157150 Gso10g2034 10 47367807 47368959 PCT
Gso20g1325 20 43295506 43296719 Gso16g1417 16 34155589 34157150 PCT
Gso10g2034 10 47367807 47368959 Gso16g1417 16 34155589 34157150 PCT