Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0602 ATGGTGGAGAGCACAGAACCAGGAGCGAGAGGGATACTCGGGTTGTTCCAGTTCCAGTTACTCCACCCCAAAACGACACCCTTCGCGTCTCACAAGACGCTCTTAGCGTTCCTGTGGGTGGCCACGCTGGCCTCGGTGTTGTTGTGGCAGAGAACTACGATCAGCGGGTTTCTGGTGCAGGGCGGCGTGCCGGTGAGGGCGCCGCCGAAGCTAAGGCCGGTGGTTTTCTGTTTGACGGAGTTCGGCGGTGTCGGCGACGGCGTTACGCTCAACACGGAGGCGTTTGAGAGAGGTGTTGGTGCGATCTCGAAGTTGGGAGATAAGGGTGGGGGTCAACTTAATGTGCCACCTGGGCGGTGGCTCACTGCGCCGTTTAATCTCACCAGTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGGATGAAAAGTATTGGCCATTGATGCCCGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCTGGTCCTCGATATAGCAGTTTAATTCATGGTCAAAATCTTAGAGATGTTGTCATAACAGGCCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTGGTCTAGTAACATTGTGATCTCAAATATTACTCTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTTAAAAATGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGAATAACTTATGGAAGGCCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTCCTGGTGGAGAACATTCTTGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGATATGTGCGTCAAATAACTTACAAAAATCTAATGTTCAAAAACGTTCGCGTTGGAATTGTGATCAAGACAGATTACAATGAACACCCTGGTACTGGATATGATCCTAGAGCACTTCCAATACTCAGAGACATAAGCTTCATCAACATTCGCGGTCAAGGAGTTCGTGTGCCTGTTCGAATTCAAGGTAGTGAACAGATTCCAGTTAGAAATGTGACTTTCCAGGATATGAAGATTGGCATAACTTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGCAATAGGGACCATCTTTCCTTCTCCCTGTGACAGCTTTGATCGGTACAATGAGCAAGGACAGCTTGTTAAGCATGCTGCTTCTCAGAATGTAACAGATATAGATTATGAAATTTGA 1485 0.464 MVESTEPGARGILGLFQFQLLHPKTTPFASHKTLLAFLWVATLASVLLWQRTTISGFLVQGGVPVRAPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVGAISKLGDKGGGQLNVPPGRWLTAPFNLTSHMTLFLARDSVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMFKNVRVGIVIKTDYNEHPGTGYDPRALPILRDISFINIRGQGVRVPVRIQGSEQIPVRNVTFQDMKIGITYKKKHIFQCAFVQGQAIGTIFPSPCDSFDRYNEQGQLVKHAASQNVTDIDYEI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0602 494 Gene3D - 63 458 IPR012334 -
Gso9g0602 494 Pfam Glycosyl hydrolases family 28 171 454 IPR000743 GO:0004650|GO:0005975
Gso9g0602 494 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 24 492 - -
Gso9g0602 494 PANTHER PECTIN LYASE-RELATED 24 492 - -
Gso9g0602 494 SUPERFAMILY Pectin lyase-like 66 467 IPR011050 -
Gso9g0602 494 SMART pbh1 243 270 IPR006626 -
Gso9g0602 494 SMART pbh1 362 383 IPR006626 -
Gso9g0602 494 SMART pbh1 305 327 IPR006626 -
Gso9g0602 494 SMART pbh1 271 292 IPR006626 -
Gso9g0602 494 SMART pbh1 423 444 IPR006626 -
Gso9g0602 494 SMART pbh1 333 354 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0602 Gso-Chr9 7187230 7193084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0602 16 494 Glycoside Hydrolase AT1G19170 72.323 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0602 - - gmx:100800910 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1484 15 17273928 17279909 Gso9g0602 9 7187230 7193084 GST
Gso13g0817 13 22474909 22482522 Gso9g0602 9 7187230 7193084 PCT
Gso17g0395 17 3625925 3633975 Gso9g0602 9 7187230 7193084 PCT
Gso9g0602 9 7187230 7193084 Gso13g0817 13 22474909 22482522 PCT
Gso9g0602 9 7187230 7193084 Gso17g0395 17 3625925 3633975 PCT