Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0817 ATGGTGGATAACTCGACGCTAGGGCGCTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGGTCCCCGCGTTCTTCACCTCGCACAAGACCCTCTTGACCTTTCTATGGATCGCCGCCTTCGCCTCCGTTTTTCTGTGGCAGAGGAACATAGCTGGTGGCTTTCTGGTCTACGGAGGAATTCCGGCCAGGCCCATGCCCATGCTCCGCCCCATGGCCTTCAATTTGACGGATTTCGGAGGGGTCGGTGACGGCGTTACTCTCAACACCGAGGCTTTCAAGAGGGCCGTTTCAGCGGTTTCTAAGTTCGGCAAGAAAGGCGGTGCGCAGTTGAATGTGCCTCCCGGACGCTGGCTCACGGCGCCGTTTAATCTAACCAGCCACATGACTCTCTTCCTAGCTGAAGATGCTGTTATACTTGGCATTGATGATGAAAAATATTGGCCATTGATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAACATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTTTTCTAGTGACATTGTGATCACCAATATAACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACTATATTGGCTCCTGTGTTTGGAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGCGGGGTATCCAACGTCATGGTGGAGAATATTCTTATATGGGATTCTAGGCGTGGTGTGAGGATCAAGACCGCCCGTGGACGAGGAGCATATGTGCGCCAAATAACTTATCGGAATATAACATTTGAGAATGTTCGAGTTGGAATAGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGATCCTATGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACGGTCCATGGCCAAGGAGTTCGTGTGCCAGTACGCATACACGGTAGTGAGGAGATTCCTGTGAGAAATGTGACTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAAAAAGCATATCTTTCAGTGTGCATTTGTTCAAGGCCGTGTAATAGGTACCATCTATCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGTTGGTTAAGCATTCTGCGTCCCAGAATGTAACAGATATAGATTATGATATTTGA 1476 0.4715 MVDNSTLGRFHHQRLDLRRWVPAFFTSHKTLLTFLWIAAFASVFLWQRNIAGGFLVYGGIPARPMPMLRPMAFNLTDFGGVGDGVTLNTEAFKRAVSAVSKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMFSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNVMVENILIWDSRRGVRIKTARGRGAYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPMALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQGRVIGTIYPAPCENLDRYNEQGQLVKHSASQNVTDIDYDI* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0817 491 Gene3D - 62 453 IPR012334 -
Gso13g0817 491 SUPERFAMILY Pectin lyase-like 63 464 IPR011050 -
Gso13g0817 491 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 21 489 - -
Gso13g0817 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Gso13g0817 491 SMART pbh1 268 289 IPR006626 -
Gso13g0817 491 SMART pbh1 240 267 IPR006626 -
Gso13g0817 491 SMART pbh1 302 324 IPR006626 -
Gso13g0817 491 SMART pbh1 330 351 IPR006626 -
Gso13g0817 491 SMART pbh1 359 380 IPR006626 -
Gso13g0817 491 SMART pbh1 420 441 IPR006626 -
Gso13g0817 491 PANTHER PECTIN LYASE-RELATED 21 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0817 Gso-Chr13 22474909 22482522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0817 1 491 Glycoside Hydrolase AT1G19170 73.913 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0817 - - gmx:100801914 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0817 13 22474909 22482522 Gso17g0395 17 3625925 3633975 GST
Gso13g0817 13 22474909 22482522 Gso15g1484 15 17273928 17279909 PCT
Gso13g0817 13 22474909 22482522 Gso9g0602 9 7187230 7193084 PCT
Gso15g1484 15 17273928 17279909 Gso13g0817 13 22474909 22482522 PCT
Gso9g0602 9 7187230 7193084 Gso13g0817 13 22474909 22482522 PCT