Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0395 ATGATGGTGGAGACCTCGACGCTAGGGCACTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGGTCCCCGCGTTCTTCACCTCGCACAAGACCCTCTTGACCCTTCTATGGATCGCCGCCTTCGCCTCCGTTTTTCTGTGGCAGAGGAACATAGTGGGCGGGTTTCTGGTCTACGGAGGAATTCCGGGCAGGCCCATGCCCATGCTCCGCCCAATGGCCTTCAATTTGACGGATTTCGGTGGGGTCGGTGACGGCGTTACTCTCAACACCGAGGCTTTCGAGAGGGCCGTTTCTGCGGTTTCTAAGTTCGGGAAGAAAGGCGGTGCGCAGTTGAATGTGCCTCCTGGACGCTGGCTCACGGCGCCGTTTAATCTCACCAGCCACATGACTCTCTTTCTAGCTGAAGATGCTGTTATACTTGGCATTGATGATGAAAAATATTGGCCACTGATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAGTCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTTTTCTAGTGACATTGTGATCACTAATATTACTTTGCGTGACTCTCCTTTCTGGACAATTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTGACTATATTGGCTCCTGTGTTTGGAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCTGTAAAAAGTGGCTGGGATCAGTATGGAATTGATTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGCAGTGAAATGTCTGGCGGGGTATCCAATGTCACGGTGGAGAATCTTCTTATATGGGATTCTAGGCGTGGTGTGAGGATCAAGACCGCCCCTGGACGAGGAGCATATGTGCGCCAAATAACTTATCGGAATATAACATTTGAGAATGTTCGAGTTGGAATTGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTTTGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACAGTCCATGGCCAAGGAGTTCGCGTGCCAGTACGCATACACGGTAGTGAAGAGATTCCTGTGAGAAATGTGACTTTTAAAGATATGTCAGTTGGTCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCATTTGTTCAAGGCCGTGTAATAGGTACCATCTATCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGTTGGTTAAGCATTCTGCGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1479 0.4726 MMVETSTLGHFHHQRLDLRRWVPAFFTSHKTLLTLLWIAAFASVFLWQRNIVGGFLVYGGIPGRPMPMLRPMAFNLTDFGGVGDGVTLNTEAFERAVSAVSKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQGQSWWKKYRQKRLNHTRGPLVQIMFSSDIVITNITLRDSPFWTIHPYDCKNITIKGVTILAPVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAVKSGWDQYGIDYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNVTVENLLIWDSRRGVRIKTAPGRGAYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPLALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFKDMSVGLTYKKKHIFQCAFVQGRVIGTIYPAPCENLDRYNEQGQLVKHSASQNVTDIDYDF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0395 492 SUPERFAMILY Pectin lyase-like 66 465 IPR011050 -
Gso17g0395 492 Gene3D - 65 454 IPR012334 -
Gso17g0395 492 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 23 490 - -
Gso17g0395 492 SMART pbh1 218 240 IPR006626 -
Gso17g0395 492 SMART pbh1 360 381 IPR006626 -
Gso17g0395 492 SMART pbh1 269 290 IPR006626 -
Gso17g0395 492 SMART pbh1 241 268 IPR006626 -
Gso17g0395 492 SMART pbh1 303 325 IPR006626 -
Gso17g0395 492 SMART pbh1 331 352 IPR006626 -
Gso17g0395 492 PANTHER PECTIN LYASE-RELATED 23 490 - -
Gso17g0395 492 Pfam Glycosyl hydrolases family 28 169 451 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0395 Gso-Chr17 3625925 3633975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0395 10 491 Glycoside Hydrolase AT1G19170 74.747 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0395 - - gmx:100818529 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0395 17 3625925 3633975 Gso17g0395 17 3625925 3633975 ECH
Gso13g0817 13 22474909 22482522 Gso17g0395 17 3625925 3633975 GST
Gso17g0395 17 3625925 3633975 Gso15g1484 15 17273928 17279909 PCT
Gso17g0395 17 3625925 3633975 Gso9g0602 9 7187230 7193084 PCT
Gso15g1484 15 17273928 17279909 Gso17g0395 17 3625925 3633975 PCT
Gso9g0602 9 7187230 7193084 Gso17g0395 17 3625925 3633975 PCT