Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1484 ATGGTGGAAAACACAGGACAAGGAGGAGGCATATGGTTCCAGTTGTTCCACCCCAAAACGGCGCCGTTCGCGTCTCACAAGACGCTCTTTGTGTTCCTGTGGGTGGTCACGCTGGCCTCGGTGATGGTGTGGCAGAGGACCACCATCAGCGGGTTTCTTGTGCTCGGCGGCGTCCCCGTGAGGACGCCGCCGAAGCTAAGGCCGGTGGTGTTCTGTTTAACGGAGTTCGGCGGTGTTGGCGACGGCGTTACTCTCAACACGGAGGCGTTTGAGAGAGGCGTTGGTGCCATTTCCAAGTTGGGGGATAAGGGTGGTGGACAACTGAATGTGCCACCTGGGCGGTGGCTCACTGCTCCGTTTAATCTCACCAGTCACATGACTCTCTTTCTTGCGAGAGATGCTGTCATACTTGCAGTTCAGGATGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCCGGTCCTCGATATAGCAGTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTGGTCTAGTAACATTGTGATTTCAAATATTACTCTGCGTGACTCTCCCTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATACGGAATTACTTATGGAAGGCCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCTGGTGGAGAACATTCTTGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCTCCAGGAAGAGGCGGATATGTGCGGCAAATAACATACAAAAATCTAATGTTAAAAAATGTGCGCGTTGGAATTGTGATCAAGACAGATTACAATGAACACCCTGGTGCTGGATATGATCCTAGAGCACTTCCAATACTCAGAGACATAAGCTTCATGAATATCCGCGGCCAGGGTGTTCGCGTGCCGGTTCGAATTCAAGGCAGTGAACAGATTCCAGTTAGAAATGTGACTTTCCAGGATATGAAAGTTGGCATAACCTACAAGAAGAAACATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGCAATAGGGACCATATTTCCTTCTCCCTGTGACAGCTTTGATCGGTACAATGAGCAAGGACAGCTTGTTAAGCATGCTGCTTCACAGAATGTCACAGATATAGATTATGAAATTTGA 1470 0.4687 MVENTGQGGGIWFQLFHPKTAPFASHKTLFVFLWVVTLASVMVWQRTTISGFLVLGGVPVRTPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVGAISKLGDKGGGQLNVPPGRWLTAPFNLTSHMTLFLARDAVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLVDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKKVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMLKNVRVGIVIKTDYNEHPGAGYDPRALPILRDISFMNIRGQGVRVPVRIQGSEQIPVRNVTFQDMKVGITYKKKHIFQCAFVQGQAIGTIFPSPCDSFDRYNEQGQLVKHAASQNVTDIDYEI* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1484 489 Pfam Glycosyl hydrolases family 28 166 449 IPR000743 GO:0004650|GO:0005975
Gso15g1484 489 SUPERFAMILY Pectin lyase-like 60 462 IPR011050 -
Gso15g1484 489 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 20 487 - -
Gso15g1484 489 PANTHER PECTIN LYASE-RELATED 20 487 - -
Gso15g1484 489 Gene3D - 59 453 IPR012334 -
Gso15g1484 489 SMART pbh1 357 378 IPR006626 -
Gso15g1484 489 SMART pbh1 238 265 IPR006626 -
Gso15g1484 489 SMART pbh1 266 287 IPR006626 -
Gso15g1484 489 SMART pbh1 418 439 IPR006626 -
Gso15g1484 489 SMART pbh1 300 322 IPR006626 -
Gso15g1484 489 SMART pbh1 328 349 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1484 Gso-Chr15 17273928 17279909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1484 13 489 Glycoside Hydrolase AT1G19170 72.211 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1484 - - gmx:100791187 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1484 15 17273928 17279909 Gso9g0602 9 7187230 7193084 GST
Gso13g0817 13 22474909 22482522 Gso15g1484 15 17273928 17279909 PCT
Gso17g0395 17 3625925 3633975 Gso15g1484 15 17273928 17279909 PCT
Gso15g1484 15 17273928 17279909 Gso13g0817 13 22474909 22482522 PCT
Gso15g1484 15 17273928 17279909 Gso17g0395 17 3625925 3633975 PCT