Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0508 ATGGCCACCGCCGAACCACTCCAGAACGGCTCCGCCGAAAACCCACTTCCGGTGGACAATGCCCCCGCCGCGCAACCGCCCACCGAAACGGAAGCTGACGCCGCCGCCACGGCATCTACTCCGCCGGAGAAGAGGTGGCCGGGGTGGCCTGGGGACTGCGTGTTTCGGCTCATCGTGCCGGTGGGAAAAGTGGGAAGCATCATTGGACGCAAGGGAGAGCTGATAAAGAAGATGTGCGAAGAAACTCGATCCCGCATTCGCGTTCTCGACGCTCCTCTCGGCACTCCCGATCGAATTGTACTTGTGTCCGGGAAGGAAGATCCAGAGGCAGCTCTTTCCCCGGCAATGGATGCTGTAGTAAGGATATTCAAGCGTGTCTCTGGATTCTCTGAAACTGATGCTGAGAATCAAGAATCTGCCGCTGGTCTTGCATTTTCTTCCATCCGTTTATTGGTGGCATCGACTCAGGCTATCAATTTAATTGGAAAGCAAGGCTCGTTAATCAAATCTATTCAGGAGAATACCAGTGCTTCAGTTAGAGTGTTGTCAGGAGATGAGGTGCAATTTTATGCTACTGCGAATGAGAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGCGTTCTTCCCCTATTTGAGAAAACTTACAATGCCCCTACCTCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGTTGCATACTTCTTCACGTACTAGCATATTTGCCGATATTCCTCTTTCAACAAAAAGGGATTCTGTCTTAGCTGACCGTGAAAGTCAATTGGACTTGTTTCTCCCTTCCTCCACTATGTCTCTCTATGGGCAGGATTCTTCACTTTCTGGCGTCCATTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGAATACATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCCGGGTTCCTGATGAAATCGTTGTAGAAATAAAAGGCACCTCATCTGAGGTTCAAACAGCTCAACAATTGATTCAGGATGTTATAAGCAGTCACAAAGAACCTGTCACTAGCAGTTATGGCAGGCTAGATGCAGTTCCAAGGTCTTCATACTCTCATTTGGGCACTACATCACGCCTCCCTCCATCTTCGTTGTCCTCACAACCATACACAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1332 0.4842 MATAEPLQNGSAENPLPVDNAPAAQPPTETEADAAATASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEDPEAALSPAMDAVVRIFKRVSGFSETDAENQESAAGLAFSSIRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVQFYATANERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNAPTSQDRQAETWSDKSLLHTSSRTSIFADIPLSTKRDSVLADRESQLDLFLPSSTMSLYGQDSSLSGVHSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPVTSSYGRLDAVPRSSYSHLGTTSRLPPSSLSSQPYTGYGASGLGDYSTFRL* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0508 443 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 41 430 - -
Gso9g0508 443 MobiDBLite consensus disorder prediction 1 15 - -
Gso9g0508 443 MobiDBLite consensus disorder prediction 1 47 - -
Gso9g0508 443 SMART kh_6 144 219 IPR004087 GO:0003676
Gso9g0508 443 SMART kh_6 51 124 IPR004087 GO:0003676
Gso9g0508 443 SMART kh_6 318 387 IPR004087 GO:0003676
Gso9g0508 443 Pfam KH domain 148 214 IPR004088 GO:0003723
Gso9g0508 443 Pfam KH domain 322 384 IPR004088 GO:0003723
Gso9g0508 443 Pfam KH domain 55 107 IPR004088 GO:0003723
Gso9g0508 443 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 388 IPR036612 GO:0003723
Gso9g0508 443 ProSiteProfiles Type-1 KH domain profile. 319 382 - -
Gso9g0508 443 ProSiteProfiles Type-1 KH domain profile. 52 119 - -
Gso9g0508 443 CDD KH-I 321 383 - -
Gso9g0508 443 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 45 111 IPR036612 GO:0003723
Gso9g0508 443 MobiDBLite consensus disorder prediction 408 429 - -
Gso9g0508 443 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 226 IPR036612 GO:0003723
Gso9g0508 443 CDD PCBP_like_KH 147 215 - -
Gso9g0508 443 ProSiteProfiles Type-1 KH domain profile. 145 214 - -
Gso9g0508 443 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 41 430 - -
Gso9g0508 443 Gene3D K Homology domain, type 1 318 392 IPR036612 GO:0003723
Gso9g0508 443 CDD PCBP_like_KH 54 123 - -
Gso9g0508 443 Gene3D - 52 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0508 Gso-Chr9 5473146 5479600 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0508 K21444 - gmx:100817448 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1368 15 14529944 14550865 Gso9g0508 9 5473146 5479600 GST
Gso13g0727 13 21536954 21541847 Gso9g0508 9 5473146 5479600 PCT
Gso17g0494 17 4485166 4489876 Gso9g0508 9 5473146 5479600 PCT
Gso9g0508 9 5473146 5479600 Gso13g0727 13 21536954 21541847 PCT
Gso9g0508 9 5473146 5479600 Gso17g0494 17 4485166 4489876 PCT