Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0727 ATGGCCACCCTCGACCAAATCCAAAACGGCGTTTCTTCCGACAATCCCGCCGCCGCTGAACCTCCCTCCACCACCGCCGACGTCCCCCCGCCCGATGCCGCCGCCGAGAAGCGGTGGCCGGGGTGGCCGGGCCACTGCGTGTTCCGCCTCATCGTGCCGGTGCTCAAGGTCGGCAGCATCATCGGCCGCAAGGGGGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATTCGTGTCCTCGACGGCGCCGTCGGCACCTCCGATCGAATCGTACTCATATCAGGGAAGGAAGACCTGGAGGCACCTCTTTCTCCTGCAATGGATGCTGTAATAAGGGTTTTTAAACGTGTCTCTGGGTTTTCTGAAATTGATGCCAAGAATAAAGCATCAGCGGTTGCATTTTGTTCCGTCCGTTTATTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAGGAAAATACTGGTGCTTCTGTTAGAGTACTGTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTGGAACTTCAGGGAGAAGCCATGAAGGTCCTTAAGGCTTTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATAATAGTGTTCTTCCCTTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGAGCGCCAGGCAGATACTACCTGGGTTGACAAACCATCACTGCATAGCGCTTCACAACCTAGCATTGTAACTGATATTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCAGACCGTGAAAGTCAGTTGGACTCATTGCTCCCTCCTTCCACAATGTCAATGTATGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCGGCTCTCAGTCGACCCAGTGCCCCTCCTATTGTTACAACGGTAATACAAACTATGCAAATACCATTGTCCTATGCAGAGGACATCATTGGTATACAAGGGACTAATATTGAATACATTCGTCGTACTAGCGGAGCCATATTGACTGTACAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACGGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACACAGAACCTGTAGCTAGTAATTACAGCAGGTTAGATACAGGTCTGAGGTCTTCTTACCCTCAGTTGGGCAGTTCATCGTATTCCTCATCTTCCTTGTCCTCGCAACCCTATAGTGGTGGGTATGGATCTTCTGCTCTTGGAGGCTATAGTACTTTCAGACTTTGA 1311 0.4874 MATLDQIQNGVSSDNPAAAEPPSTTADVPPPDAAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEDLEAPLSPAMDAVIRVFKRVSGFSEIDAKNKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDNSVLPLFEKTYNATISQERQADTTWVDKPSLHSASQPSIVTDIPLSTKRDSLFADRESQLDSLLPPSTMSMYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHTEPVASNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGGYGSSALGGYSTFRL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0727 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 99 IPR036612 GO:0003723
Gso13g0727 436 MobiDBLite consensus disorder prediction 1 20 - -
Gso13g0727 436 CDD PCBP_like_KH 47 116 - -
Gso13g0727 436 Pfam KH domain 48 100 IPR004088 GO:0003723
Gso13g0727 436 Pfam KH domain 139 205 IPR004088 GO:0003723
Gso13g0727 436 Pfam KH domain 315 377 IPR004088 GO:0003723
Gso13g0727 436 MobiDBLite consensus disorder prediction 1 37 - -
Gso13g0727 436 ProSiteProfiles Type-1 KH domain profile. 312 375 - -
Gso13g0727 436 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 33 426 - -
Gso13g0727 436 CDD PCBP_like_KH 138 206 - -
Gso13g0727 436 MobiDBLite consensus disorder prediction 402 421 - -
Gso13g0727 436 ProSiteProfiles Type-1 KH domain profile. 45 112 - -
Gso13g0727 436 Gene3D K Homology domain, type 1 300 383 IPR036612 GO:0003723
Gso13g0727 436 ProSiteProfiles Type-1 KH domain profile. 136 205 - -
Gso13g0727 436 Gene3D - 45 213 - -
Gso13g0727 436 CDD KH-I 314 376 - -
Gso13g0727 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 132 219 IPR036612 GO:0003723
Gso13g0727 436 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 33 426 - -
Gso13g0727 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 381 IPR036612 GO:0003723
Gso13g0727 436 SMART kh_6 311 380 IPR004087 GO:0003676
Gso13g0727 436 SMART kh_6 135 210 IPR004087 GO:0003676
Gso13g0727 436 SMART kh_6 44 117 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0727 Gso-Chr13 21536954 21541847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0727 K21444 - gmx:100802089 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0727 13 21536954 21541847 Gso17g0494 17 4485166 4489876 GST
Gso13g0727 13 21536954 21541847 Gso15g1368 15 14529944 14550865 PCT
Gso13g0727 13 21536954 21541847 Gso9g0508 9 5473146 5479600 PCT
Gso15g1368 15 14529944 14550865 Gso13g0727 13 21536954 21541847 PCT
Gso9g0508 9 5473146 5479600 Gso13g0727 13 21536954 21541847 PCT