Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1368 ATGGCCACCGCCGAACCACTCCAGAATGGCACCGCCGAACCACTCCTGCCGGACAATGTCTCCGCCGCACAACCGCCCACCGAGACGGAATCCAACGCCGCCGCCGCGGCTTCCACTCCGCCGGAGAAGAGGTGGCCGGGGTGGCCTGGTGACTGCGTGTTCCGGCTCATCGTGCCGGTGGGGAAAGTTGGAAGCATCATTGGGCGCAAGGGAGAACTGATAAAGAAGATGTGCGAAGAAACTCGATCTCGCATTCGCGTTCTCGACGCTCCTCTCGGCACTCCTGATCGAATTGTACTTGTGTCCGGGAAGGAAGAGCCAGAGGCAGCCCTTTCCCCGGCAATGGATGCTGTAGTAAGGATATTCAAGCGTGTCTCTGGATTATCTGAAACTGATGCTGAGAATAAAGAATCGGCTGCTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTGGCATCGACACAAGCTATCAATTTAATTGGAAAGCAAGGCTCGTTAATCAAATCTATTCAGGAGAATACCAGTGCTTCAGTTAGAGTGTTGTCAGGAGATGAGGTTCAATCTTATGCTACCGTGGATGAGAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTTGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGCGTTCTTCCCCTATTTGAGAAAACTTACAATGCCTCTACCTCACAAGATCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGCTGCATACTACTTCACGCACTAGCATATTTGCCGATATTCCATATTCAACAAAAAGAGATTCTGTCTTAGCTGACCGTGAGAGTCAATTGGACTCGTTTCTCCCTTCCTCCACTATGTCTCTCTATGGGCAGGATTCTTCACTTTCAGGTGTTCGTTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCTTATGCGGAAGACATCATTGGTATTCAAGGGACTAATATTGAATACATTCGTCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTTCCTGATGAAATCGTTGTAGAAATAAAAGGCACCTCATCCGAGGTTCAAACAGCACAACAGTTGATTCAGGATGTTATAAGCAGTCACAAAGAACCTATCACTAGCAGTTATGGCAGGCTAGATGCAGGTCCAAGGTCTTCATACTCTCAGTTGGGCACTACATCGCGCCTCCCCCCATCTTCATTGTCCTCACAACCATACACAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1329 0.4823 MATAEPLQNGTAEPLLPDNVSAAQPPTETESNAAAAASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEEPEAALSPAMDAVVRIFKRVSGLSETDAENKESAAGLAFCSIRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNASTSQDRQAETWSDKSLLHTTSRTSIFADIPYSTKRDSVLADRESQLDSFLPSSTMSLYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPITSSYGRLDAGPRSSYSQLGTTSRLPPSSLSSQPYTGYGASGLGDYSTFRL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1368 442 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Gso15g1368 442 SMART kh_6 143 218 IPR004087 GO:0003676
Gso15g1368 442 SMART kh_6 317 386 IPR004087 GO:0003676
Gso15g1368 442 SMART kh_6 50 123 IPR004087 GO:0003676
Gso15g1368 442 Pfam KH domain 54 107 IPR004088 GO:0003723
Gso15g1368 442 Pfam KH domain 321 383 IPR004088 GO:0003723
Gso15g1368 442 Pfam KH domain 147 213 IPR004088 GO:0003723
Gso15g1368 442 CDD KH-I 320 382 - -
Gso15g1368 442 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 40 429 - -
Gso15g1368 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 387 IPR036612 GO:0003723
Gso15g1368 442 CDD PCBP_like_KH 146 214 - -
Gso15g1368 442 Gene3D K Homology domain, type 1 317 391 IPR036612 GO:0003723
Gso15g1368 442 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Gso15g1368 442 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 40 429 - -
Gso15g1368 442 CDD PCBP_like_KH 53 122 - -
Gso15g1368 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 225 IPR036612 GO:0003723
Gso15g1368 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 44 110 IPR036612 GO:0003723
Gso15g1368 442 Gene3D - 51 221 - -
Gso15g1368 442 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Gso15g1368 442 MobiDBLite consensus disorder prediction 22 36 - -
Gso15g1368 442 MobiDBLite consensus disorder prediction 1 44 - -
Gso15g1368 442 MobiDBLite consensus disorder prediction 392 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1368 Gso-Chr15 14529944 14550865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1368 K21444 - gmx:100815466 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1368 15 14529944 14550865 Gso9g0508 9 5473146 5479600 GST
Gso13g0727 13 21536954 21541847 Gso15g1368 15 14529944 14550865 PCT
Gso17g0494 17 4485166 4489876 Gso15g1368 15 14529944 14550865 PCT
Gso15g1368 15 14529944 14550865 Gso13g0727 13 21536954 21541847 PCT
Gso15g1368 15 14529944 14550865 Gso17g0494 17 4485166 4489876 PCT