Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0494 ATGGCCACCCTCGACCCAATCCAAAACGGCGTCTCTTCGGACAATCCAGCCGCCGAACCGTCCTCCACCCCCGCCGAAGACCCCACCCCAGACCCCGCCGCCGCCGAGAAGCGGTGGCCGGGGTGGCCTGGCCACTGCGTTTTCCGCCTAATCGTGCCGGTGCTCAAGGTCGGTAGCATCATCGGCCGCAAGGGGGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCACCGTCGGCACCTCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCCGGAGGCACCACTTTCTCCTGCAATGGATGCTGTTATAAGGGTTTTTAAACGTGTCTCTGGGTTTTCTGAAATTGATGCCGAGAATAAAGCATCAGCAGTTGCATTTTGTTCTGTCCGTTTATTGGTGGCCTCAACACAGGCTATAAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAGGAAAATACCGGTGCTTCTGTTAGAGTGCTGTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGACGAGAGGATCGTGGAACTACAGGGAGAAGCCATGAAGGTCCTTAAGGCTTTAGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATAATAGTGTTCTTCCCTTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGAGCACCAGGCAGATACTACCTGGGTTGATAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGTAACTGATCTTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCAGTTGGACTCATTGCTCCCTCCTTCCACAATGTCAATATATGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCGGCTCTCAGTCGACCCAGTGCTCCTCCTATTGTTACAACGGTAATACAAACCATGCAAATACCATTGTCCTATGCAGAGGACATAATTGGTATACAAGGGACTAATATTGAATACATTCGCTGTACTAGTGGAGCCATATTGACTGTTCAGGAGAGCCCGGTGCCTGATGAAATCATTGTGGAAATAAAAGGTACCTCATCTCAGGTTCAAACGGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTCTTGCTAGTAATTACAGCAGGTTAGATACAGGCCTGAGGTCTTCTTACCCTCAGTTGGGCAGTTCATCGTATTCCTCATCTTCCTCATCTTCCTTGTCCTCGCAACCCTATAGCGGTGGGTACGGATCTTCTGGTCTTGGAGGCTATAGGACTTTCAGACTTTGA 1320 0.4826 MATLDPIQNGVSSDNPAAEPSSTPAEDPTPDPAAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGTVGTSDRIVLISGKEEPEAPLSPAMDAVIRVFKRVSGFSEIDAENKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDNSVLPLFEKTYNATISQEHQADTTWVDKPSLHSASQPSIVTDLPLSTKRDSLFADRESQLDSLLPPSTMSIYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRCTSGAILTVQESPVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPLASNYSRLDTGLRSSYPQLGSSSYSSSSSSSLSSQPYSGGYGSSGLGGYRTFRL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0494 439 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 33 416 - -
Gso17g0494 439 SMART kh_6 135 210 IPR004087 GO:0003676
Gso17g0494 439 SMART kh_6 44 117 IPR004087 GO:0003676
Gso17g0494 439 SMART kh_6 311 380 IPR004087 GO:0003676
Gso17g0494 439 CDD PCBP_like_KH 47 116 - -
Gso17g0494 439 MobiDBLite consensus disorder prediction 1 38 - -
Gso17g0494 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 381 IPR036612 GO:0003723
Gso17g0494 439 CDD PCBP_like_KH 138 206 - -
Gso17g0494 439 ProSiteProfiles Type-1 KH domain profile. 312 375 - -
Gso17g0494 439 ProSiteProfiles Type-1 KH domain profile. 136 205 - -
Gso17g0494 439 Gene3D - 45 213 - -
Gso17g0494 439 Gene3D K Homology domain, type 1 310 385 IPR036612 GO:0003723
Gso17g0494 439 ProSiteProfiles Type-1 KH domain profile. 45 112 - -
Gso17g0494 439 MobiDBLite consensus disorder prediction 404 425 - -
Gso17g0494 439 CDD KH-I 314 376 - -
Gso17g0494 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 132 219 IPR036612 GO:0003723
Gso17g0494 439 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 33 416 - -
Gso17g0494 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 100 IPR036612 GO:0003723
Gso17g0494 439 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g0494 439 Pfam KH domain 139 205 IPR004088 GO:0003723
Gso17g0494 439 Pfam KH domain 315 377 IPR004088 GO:0003723
Gso17g0494 439 Pfam KH domain 48 100 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0494 Gso-Chr17 4485166 4489876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0494 K21444 - gmx:100807645 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0494 17 4485166 4489876 Gso17g0494 17 4485166 4489876 ECH
Gso13g0727 13 21536954 21541847 Gso17g0494 17 4485166 4489876 GST
Gso17g0494 17 4485166 4489876 Gso15g1368 15 14529944 14550865 PCT
Gso17g0494 17 4485166 4489876 Gso9g0508 9 5473146 5479600 PCT
Gso15g1368 15 14529944 14550865 Gso17g0494 17 4485166 4489876 PCT
Gso9g0508 9 5473146 5479600 Gso17g0494 17 4485166 4489876 PCT