Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1602 ATGAGCTTCAACAAGCTCAAAGTGTGGAATGTGCCACTACTCTTGGTGGTGTTTGCATGTTCACTGCTTGGTCAAGCTTCAGCTTCTGTGTCCTATGACCATAAGGCTATCATCATCAATGGACAGAGAAGGATACTTCTTTCTGGCTCCATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTCATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCACCTGGCAAATATTATTTTGGAGGAAACTATGATCTGGTGAGGTTCATAAAGCTAGTGCAGCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGAGGATTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGCTTCAGAACAGACAATGGACCATTTAAGTTTCAAATGGAAAAGTTTACCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTTGAGTCTCAGGGCGGTCCAATAATTCTGTCCCAGATTGAAAATGAATACGGACCTATGGAGTATGAAATTGGTGCTCCTGGTAGATCCTACACTCAATGGGCAGCACATATGGCTGTAGGACTTGGCACCGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTATATGTATCATGGCGGAACAAATTTTGGTCGAACTGCTGGTGGCCCCTTTATTGCTACGAGCTATGATTACGATGCGCCCCTTGATGAATATGGATTGGCCAGACAGCCAAAGTGGGGTCATCTGAAGGATTTACATAGAGCAATAAAACTCTGTGAACCTGCTTTAGTATCTGGAGATTCTACTGTACAACGGCTTGGAAACTATGAAGAGGCTCATGTTTTTAGATCCAAGTCTGGAGCTTGTGCTGCATTCCTTGCGAACTATAACCCACAATCTTATGCAACAGTGGCATTTGGAAATCAGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAGATGACTCGTGTTCCTATTCATGGAGGACTATCTTGGAAAGCGTTTAATGAAGAAACAACCACTACTGATGATAGTTCGTTCACTGTGACTGGCTTGTTGGAGCAGATAAATGCAACCAGAGATTTATCTGATTACTTGTGGTACTCCACAGATGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTTTTGTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGCTGTCAGGAACTGCATATGGAAGCTTAGAGGCCCCCAAACTAACCTTTAGCGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATTACATTAAGTGGTCTCAATGAGGGTAGGAGGGACTTAACTTGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTTCATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGGTTTTTAGTTTCCAGAAGACAGCCATTGACTTGGTACAAAACTACCTTTGATGCCCCAGCTGGAGTTGCACCGTTGGCTTTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGGCAAAGCCTAGGCCGCTACTGGCCTGCTTACAAAGCATCCGGTTCTTGTGGTTACTGTAACTATGCTGGAACTTACAATGAGAAGAAATGTGGAAGTAACTGTGGCGAGGCTTCTCAACGATGGTATCATGTTCCTCACTCATGGCTGAAGCCAAGTGGAAATTTATTGGTTGTGTTTGAGGAATTGGGTGGGGATCCGAACGGGATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGACATCTATGAGTGGCAGCCAAATCTTGTAAGTTATGAGATGCAAGCTTCTGGCAAAGTCAGAAGTCCTGTGAGACCAAAAGCACATTTGTCATGTGGACCTGGACAAAAAATATCATCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGGTCTTGTGGAAGCTACCGCGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCTTTCCTAAAGAATTGTGTTGGCCAGAGCTGGTGCACAGTGACAGTGTCTCCTGAAATTTTTGGAGGAGATCCTTGTCCAAGAGTCATGAAGAAACTCTCTGTGGAGGCCATTTGCACCTGA 2532 0.4372 MSFNKLKVWNVPLLLVVFACSLLGQASASVSYDHKAIIINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMEKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTQWAAHMAVGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSIARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLARQPKWGHLKDLHRAIKLCEPALVSGDSTVQRLGNYEEAHVFRSKSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMTRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINSNEGFLRNGKNPVLTVLSAGHALHVFINNQLSGTAYGSLEAPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGFLVSRRQPLTWYKTTFDAPAGVAPLALDMGSMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCGSNCGEASQRWYHVPHSWLKPSGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVRSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGSYREGSCHAHKSYDAFLKNCVGQSWCTVTVSPEIFGGDPCPRVMKKLSVEAICT* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1602 843 Gene3D Glycosidases 26 346 - -
Gso8g1602 843 Pfam Galactose binding lectin domain 765 842 IPR000922 GO:0030246
Gso8g1602 843 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Gso8g1602 843 Pfam Beta-sandwich domain in beta galactosidase 349 420 IPR041392 -
Gso8g1602 843 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Gso8g1602 843 Gene3D - 754 843 IPR043159 -
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 PANTHER BETA-GALACTOSIDASE 7 837 - -
Gso8g1602 843 ProSiteProfiles SUEL-type lectin domain profile. 757 843 IPR000922 GO:0030246
Gso8g1602 843 SUPERFAMILY Galactose-binding domain-like 404 575 IPR008979 -
Gso8g1602 843 Gene3D - 611 734 - -
Gso8g1602 843 Pfam Glycosyl hydrolases family 35 37 341 IPR031330 -
Gso8g1602 843 PANTHER BETA-GALACTOSIDASE RELATED 7 837 IPR001944 GO:0004553|GO:0005975
Gso8g1602 843 SUPERFAMILY Galactose-binding domain-like 584 747 IPR008979 -
Gso8g1602 843 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1602 Gso-Chr8 15666337 15673005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1602 10 842 Glycoside Hydrolase AT3G13750 80.526 0.0 1429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1602 - - gmx:100781074 1765.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0088 7 778850 785270 Gso8g1602 8 15666337 15673005 GST
Gso15g0212 15 1909479 1915947 Gso8g1602 8 15666337 15673005 PCT
Gso11g3602 11 51695031 51701579 Gso8g1602 8 15666337 15673005 PCT
Gso8g1602 8 15666337 15673005 Gso15g0212 15 1909479 1915947 PCT
Gso8g1602 8 15666337 15673005 Gso11g3602 11 51695031 51701579 PCT