Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0212 ATGGTTATTTGCTTGAAGCTCATAATAATGTGGAATGTGGCACTGCTTCTGGTTTTTTCTCTAATTGGTTCTGCTAAGGCCTCAGTGTCCTATGACTCAAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAAAAGGCCAAGGATGGAGGTTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGACACGAACCTTCACCTGGCAAGTATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCAGGCCTTTATGTTCATCTCAGGATTGGCCCTTATGTCTGTGCTGAGTGGAACTTTGGTGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGTTTCAGAACAGACAATGAACCATTTAAGCATCAAATGCAAAAATTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATATGAATCTCAGGGTGGTCCAATAATTATGTCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTGCTGGTAAAGCTTACACTAAGTGGGCAGCAGAAATGGCTATGGGACTTGGTACTGGGGTTCCATGGGTCATGTGCAAGCAAGATGACACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTCCTGTTCCTCATCGACCGGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTATAAATTATTACATGTATCATGGAGGAACAAATTTCGGTCGAACTGCTGGTGGTCCCTTTATTGCTACAAGCTATGATTATGATGCACCACTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTCTGTGAACCAGCTTTAGTATCTGGAGATCCTACTGTAACAAAGATTGGAAACTATCAAGAGGCTCATGTCTTTAAATCAAAGTCGGGAGCCTGTGCTGCATTCCTTGCAAACTACAACCCCAAATCTTATGCAACAGTGGCATTTGGAAACATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGAACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTCGTGTTCCTATTCATGGCGGATTCTCTTGGCTATCATTCAATGAAGAAACGACCACTACTGATGATAGTTCCTTCACCATGACTGGCCTGTTGGAGCAGTTAAATACTACAAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTGCTTGATCCCAATGAAGGATTTCTGAGAAACGGAAAGGATCCTGTTCTTACTGTGTTTTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAGCTATCAGGAACTGCATATGGAAGCTTAGAATTCCCTAAACTGACATTTAACGAGGGAGTGAAGCTTAGAGCCGGTGTTAACAAGATCTCTCTACTGAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCTCATTTTGAAACATGGAATGCTGGTGTTCTTGGTCCAATTTCATTAAGTGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTATAAGGTTGGTCTTAAAGGTGAAATCTTGAGTCTTCACTCTCTTAGTGGAAGTTCCTCAGTGGAGTGGATTCAGGGATCTTTAGTTTCTCAAAGGCAGCCATTGACTTGGTACAAAACAACATTTGACGCGCCAGCTGGGACTGCACCATTGGCTTTAGACATGGACAGCATGGGCAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTACTGGCCTGCTTATAAAGCATCCGGTACCTGTGATTACTGTGACTATGCTGGAACTTATAACGAGAATAAATGCAGAAGTAACTGTGGCGAGGCTTCCCAAAGATGGTATCATGTTCCTCAATCATGGCTAAAGCCAACAGGAAATTTATTGGTTGTGTTTGAAGAGCTAGGTGGAGACCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGATATTTATGAGTGGCAGCCAAATCTTATAAGCTATCAGATGCAAACTTCTGGCAAAGCACCTGTTAGACCAAAAGTTCATTTATCATGTAGCCCGGGACAGAAAATCTCATCAATCAAATTTGCTAGCTTTGGTACTCCAGCAGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCCTTTGAAAGGAATTGTGTTGGACAGAACTGGTGCACAGTAACAGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCTTGAAGAAACTCTCAGTGGAAGCTATTTGTTCCTGA 2523 0.4257 MVICLKLIIMWNVALLLVFSLIGSAKASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKHQMQKFTTKIVDLMKAERLYESQGGPIIMSQIENEYGPMEYEIGAAGKAYTKWAAEMAMGLGTGVPWVMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPTVTKIGNYQEAHVFKSKSGACAAFLANYNPKSYATVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQSAQMKMTRVPIHGGFSWLSFNEETTTTDDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDPNEGFLRNGKDPVLTVFSAGHALHVFINGQLSGTAYGSLEFPKLTFNEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGEILSLHSLSGSSSVEWIQGSLVSQRQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYQMQTSGKAPVRPKVHLSCSPGQKISSIKFASFGTPAGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNVLKKLSVEAICS* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0212 840 Gene3D - 744 840 IPR043159 -
Gso15g0212 840 Gene3D - 598 733 - -
Gso15g0212 840 Pfam Glycosyl hydrolases family 35 36 340 IPR031330 -
Gso15g0212 840 PANTHER BETA-GALACTOSIDASE 11 834 - -
Gso15g0212 840 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Gso15g0212 840 SUPERFAMILY Galactose-binding domain-like 403 574 IPR008979 -
Gso15g0212 840 Pfam Beta-sandwich domain in beta galactosidase 348 419 IPR041392 -
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 Gene3D Glycosidases 25 345 - -
Gso15g0212 840 Pfam Galactose binding lectin domain 762 839 IPR000922 GO:0030246
Gso15g0212 840 PANTHER BETA-GALACTOSIDASE RELATED 11 834 IPR001944 GO:0004553|GO:0005975
Gso15g0212 840 SUPERFAMILY Galactose-binding domain-like 583 748 IPR008979 -
Gso15g0212 840 ProSiteProfiles SUEL-type lectin domain profile. 754 840 IPR000922 GO:0030246
Gso15g0212 840 SUPERFAMILY (Trans)glycosidases 29 345 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0212 Gso-Chr15 1909479 1915947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0212 14 840 Glycoside Hydrolase AT3G13750 80.941 0.0 1436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0212 - - gmx:100811187 1758.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0212 15 1909479 1915947 Gso11g3602 11 51695031 51701579 GST
Gso15g0212 15 1909479 1915947 Gso7g0088 7 778850 785270 PCT
Gso15g0212 15 1909479 1915947 Gso8g1602 8 15666337 15673005 PCT
Gso7g0088 7 778850 785270 Gso15g0212 15 1909479 1915947 PCT
Gso8g1602 8 15666337 15673005 Gso15g0212 15 1909479 1915947 PCT