Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0088 ATGAGCTTCCACAAGCTCATAATGTGGAATGTGCCACTACTCTTGGTGGTGGTGGTGTTTGCATGCTCACTGATTGGTCATGCTTCAGCTTCTGTGTCCTATGACCATAAGGCTATCACCATCAATGGACAAAGAAGGATACTCCTTTCTGGCTCCATTCACTATCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTCATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCACCTGGCAAATATTATTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTCTATGTTAACCTCAGAATTGGTCCTTACGTTTGTGCTGAATGGAACTTTGGAGGTTTCCCTGTTTGGCTCAAGTACATTCTAGGTATCAGCTTCAGAACAGACAATGGACCGTTTAAGTTTCAAATGGAAAAGTTTACCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGCGGTCCAATAATTCTGTCCCAGATTGAAAATGAATATGGGCCTATGGAGTATGAAATTGGTGCTCCTGGTAGAGCCTACACTCAATGGGCAGCACATATGGCTGTAGGACTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGAAGATGCTCCTGATCCTATCATTAACACTTGCAATGGTTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGATTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTATATGTATCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACGAGCTATGATTACGATGCGCCTCTTGATGAATATGGATTGCCCAGACAGCCAAAGTGGGGTCATCTGAAGGATTTACATAGAGCAATAAAACTCTGTGAACCTGCTTTAGTATCTGGAGATCCTACTGTACAACAGCTTGGAAACTACGAAGAGGCTCATGTTTTTAGATCAAAGTCTGGGGCTTGTGCTGCATTCCTTGCGAACTATAACCCACAATCTTATGCAACAGTGGCATTTGGAAATCAGCGTTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAGATGACTCGTGTTCCTATTCATGGAGGACTATCTTGGAAAGCATTTAATGAAGAGACAACCACTACTGATGATAGTTCGTTCACTGTGACTGGCCTGTTGGAGCAGATAAATGCAACCAGAGATTTATCTGATTACTTGTGGTACTCCACAGATGTTGTGATCAATTCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTTTTGTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGCTGTCAGGAACTGCATATGGAAGCTTAGAGGCCCCCAAACTAACCTTTAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATTTCTCTTCTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGGCCACATTTTGAAAGATGGAATGCTGGTGTTCTTGGCCCAATTACATTAAGTGGTCTCAATGAGGGGAGAAGGGACTTAACTTGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTTCATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGCTTTTTAGTTTCCAGAAGACAGCCATTGACTTGGTACAAAACTACCTTTGATGCCCCAGCTGGAGTTGCACCATTGGCTTTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAAAGTCTGGGCCGCTATTGGCCTGCTTACAAAGCATCCGGTTCTTGTGGTTACTGTAACTATGCTGGAACTTACAACGAGAAGAAATGTGGAAGTAACTGTGGCCAGGCTTCTCAAAGATGGTATCATGTTCCTCACTCATGGCTGAAGCCAACTGGAAATTTATTGGTTGTGTTTGAGGAATTGGGTGGGGATCCGAACGGGATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGATATCTATGAGTGGCAACCAAATCTTGTAAGTTATGACATGCAAGCTTCTGGCAAAGTCAGAAGTCCTGTGAGACCAAAAGCACATTTGTCATGTGGCCCTGGACAAAAAATCTCATCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGGTCTTGTGGAAACTACCGCGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCTTTCCAAAAGAATTGTGTTGGCCAGAGCTGGTGCACAGTGACAGTGTCTCCTGAAATTTTTGGAGGAGATCCTTGTCCAAGTGTCATGAAGAAACTCTCAGTGGAAGCCATTTGCACCTGA 2538 0.4362 MSFHKLIMWNVPLLLVVVVFACSLIGHASASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYILGISFRTDNGPFKFQMEKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRAYTQWAAHMAVGLGTGVPWIMCKQEDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSIARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPRQPKWGHLKDLHRAIKLCEPALVSGDPTVQQLGNYEEAHVFRSKSGACAAFLANYNPQSYATVAFGNQRYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMTRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINSNEGFLRNGKNPVLTVLSAGHALHVFINNQLSGTAYGSLEAPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGFLVSRRQPLTWYKTTFDAPAGVAPLALDMGSMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCGSNCGQASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYDMQASGKVRSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGNYREGSCHAHKSYDAFQKNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAICT* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0088 845 Pfam Beta-sandwich domain in beta galactosidase 351 422 IPR041392 -
Gso7g0088 845 Gene3D Glycosidases 26 347 - -
Gso7g0088 845 Pfam Glycosyl hydrolases family 35 39 343 IPR031330 -
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 311 327 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 622 636 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PRINTS Glycosyl hydrolase family 35 signature 649 665 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 PANTHER BETA-GALACTOSIDASE RELATED 9 839 IPR001944 GO:0004553|GO:0005975
Gso7g0088 845 SUPERFAMILY Galactose-binding domain-like 586 749 IPR008979 -
Gso7g0088 845 Pfam Galactose binding lectin domain 767 844 IPR000922 GO:0030246
Gso7g0088 845 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Gso7g0088 845 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Gso7g0088 845 Gene3D - 602 736 - -
Gso7g0088 845 PANTHER BETA-GALACTOSIDASE 9 839 - -
Gso7g0088 845 Gene3D - 756 845 IPR043159 -
Gso7g0088 845 ProSiteProfiles SUEL-type lectin domain profile. 759 845 IPR000922 GO:0030246
Gso7g0088 845 SUPERFAMILY Galactose-binding domain-like 406 577 IPR008979 -
Gso7g0088 845 SUPERFAMILY (Trans)glycosidases 31 348 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0088 Gso-Chr7 778850 785270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0088 6 844 Glycoside Hydrolase AT3G13750 79.499 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0088 - - gmx:100785688 1769.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0088 7 778850 785270 Gso8g1602 8 15666337 15673005 GST
Gso15g0212 15 1909479 1915947 Gso7g0088 7 778850 785270 PCT
Gso11g3602 11 51695031 51701579 Gso7g0088 7 778850 785270 PCT
Gso7g0088 7 778850 785270 Gso15g0212 15 1909479 1915947 PCT
Gso7g0088 7 778850 785270 Gso11g3602 11 51695031 51701579 PCT