Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1101 ATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTTTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAAGGGTCTGAAAGAAGGCATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCATGGGATGACTACGAATACCCTCAATCACCAAATGCATACCCACAACAAAATCCTTATCATACGCCTCTTCACCACCGTGCACCGGCTCCATTCCACGACTATTCACAGCCAAAAAGGAAATTGGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCCCTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCCAATCTCATTGTTGGAATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGTGGTCAGAATCCTTATGAACAAGCAATCTCGATCATTGGGAAAACATTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGTCAAGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGTGGCCAATATCATGTCCTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAACATGGCCAGCTAAGTCCACAGGAAGAGAAGACAATTGGTGCAATTGTAAAAGCCAGCGGGTATCCACTTTCAATAGTTTTGGTAGGGGTTGGAGATGGACCGTGGGATATGATGAGGGAATTTGATGATAACATCCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAAAGGGTATAGACTCAAGCAGAAAAGAGACAGAGTTTGCGCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTTGGCATATTGGGTGCACGGAGAGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTAGCAGCAGCACAACATCTTTTCGATCAAACAGTTTTCAGCATAGCACACCAACATATGATAATGTAAACGCAGAATCGTCTTCAAGAAGCTCATATGATAATAAGGTTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGACTGTGGAGAAAACCTCGAATGCTGCCCCATTTGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAG 1380 0.4225 MLLELETWTALVFLFLLVLILKESIMGGKSSKGSERRHVSSYGSAGSSSSWDDYEYPQSPNAYPQQNPYHTPLHHRAPAPFHDYSQPKRKLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGQNPYEQAISIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEEKTIGAIVKASGYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKGIDSSRKETEFALSALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPHYERASSSSTTSFRSNSFQHSTPTYDNVNAESSSRSSYDNKVCPICLTNGKDMAFGCGHQTCCDCGENLECCPICRSTITTRIKLY* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1101 459 PANTHER COPINE FAMILY PROTEIN 1 26 459 - -
Gso8g1101 459 MobiDBLite consensus disorder prediction 363 410 - -
Gso8g1101 459 SUPERFAMILY RING/U-box 409 455 - -
Gso8g1101 459 SUPERFAMILY vWA-like 120 303 IPR036465 -
Gso8g1101 459 Pfam Copine 144 357 IPR010734 -
Gso8g1101 459 PANTHER RING-FINGER PROTEIN 26 459 - -
Gso8g1101 459 Pfam Zinc finger, C3HC4 type (RING finger) 413 454 - -
Gso8g1101 459 MobiDBLite consensus disorder prediction 376 410 - -
Gso8g1101 459 MobiDBLite consensus disorder prediction 37 68 - -
Gso8g1101 459 CDD RING-HC_RGLG_plant 415 459 IPR045317 GO:0061630|GO:0070534
Gso8g1101 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 459 IPR013083 -
Gso8g1101 459 ProSiteProfiles Zinc finger RING-type profile. 416 449 IPR001841 -
Gso8g1101 459 SMART VWA_4 119 322 IPR002035 -
Gso8g1101 459 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1101 Gso-Chr8 10126093 10130918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1101 K16280 - gmx:100800161 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1473 5 38186167 38190864 Gso8g1101 8 10126093 10130918 GST
Gso8g1101 8 10126093 10130918 Gso18g0114 18 957254 961662 PCT
Gso8g1101 8 10126093 10130918 Gso13g1506 13 30528663 30532502 PCT