Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1506 ATGCATCTAGAGCTAGAGACTTGGACAATTTTGGTTGCTATTGTGTGCATCTTGGTATTTCTTCTGAAGGAGTTTGTTATGGGAGGGAAGAGCTCAAAAGGGAGTGGTAGGAGGTATGATTTTGGTGCTTCTTCATCTTCAAGGGATAATAGCTATGGTGGATACCCTCCGCAATCACCATACACTTCTTATCAAACACCTCAGCACCCTTGTGCATCAGCATCAGCATCAGCTCCATTTTATGACTATGCACAGCCAAAAAGGAAGTTGGATAAGAAGTATTCCAGAATAGCTGATAATTACCGTTCTTTGGATGAGGTTACTGCTGCACTTGCGAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGAATTGATTTCACCAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTAGAAGTGGTCAAAACCCTTATGAACAAGCAATTTCTATTATCGGAAAGACTTTATCTGCTTTCGATGAAGATAACTTGATTCCCTGTTTTGGATTCGGAGATGCGTCTACACATGATCAAGATGTATTCAGTTTCTTTTCAGAAGAGAGGTTCTGCAATGGGTTTGAGGAAGTTCTGACACGATACAGACAAATTATTCCTTCCCTCAAACTCGCAGGACCCACTTCATTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCGTTGACACACAGCATGGCAACTTAAGTCCGCAAGAGCTTAATACAATAAATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGAAATGATGAGGGAATTTGATGATAACATCCCTTCTCGTGTATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGAGGAGGAATGTAGATCCAGCCAGAAAAGAGACAGATTTTTCACTTTCAGCTTTGATGGAGATACCTTCTCAATACAAGGCAACCCTAGAGCTTGGCATATTGGGTTCACGGAGGGGACATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATAGTAGAACCTCTTCCAGCATCAGCACAAAATCTACAAGGTCAAACAGTTTTCAGCAGAGGACACCTACACATACTAGCTATGATAGCGGTGTTCACACAGAGACATCATCAAGTTCTTTATACGATAATAAGGTTTGCCCCATTTGTCTTACCAATGCAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAGTGTGGAGAAGACCTCCAATTCTGTCCCATTTGCCGGAGCACAATCCATACTAGAATAAGGCTTTACTAG 1392 0.4167 MHLELETWTILVAIVCILVFLLKEFVMGGKSSKGSGRRYDFGASSSSRDNSYGGYPPQSPYTSYQTPQHPCASASASAPFYDYAQPKRKLDKKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIRSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLTRYRQIIPSLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGNLSPQELNTINAIVKASEYPLSIVLVGVGDGPWEMMREFDDNIPSRVFDNFQFVNFTEIMRRNVDPARKETDFSLSALMEIPSQYKATLELGILGSRRGHSPDRVALPPPLYSRTSSSISTKSTRSNSFQQRTPTHTSYDSGVHTETSSSSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIRLY* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1506 463 SMART VWA_4 118 321 IPR002035 -
Gso13g1506 463 MobiDBLite consensus disorder prediction 38 70 - -
Gso13g1506 463 PANTHER RING-FINGER PROTEIN 27 463 - -
Gso13g1506 463 MobiDBLite consensus disorder prediction 30 70 - -
Gso13g1506 463 Pfam Zinc finger, C3HC4 type (RING finger) 417 457 - -
Gso13g1506 463 PANTHER COPINE FAMILY PROTEIN 1 27 463 - -
Gso13g1506 463 SUPERFAMILY RING/U-box 410 459 - -
Gso13g1506 463 MobiDBLite consensus disorder prediction 373 412 - -
Gso13g1506 463 MobiDBLite consensus disorder prediction 362 412 - -
Gso13g1506 463 CDD RING-HC_RGLG_plant 419 463 IPR045317 GO:0061630|GO:0070534
Gso13g1506 463 SUPERFAMILY vWA-like 119 302 IPR036465 -
Gso13g1506 463 ProSiteProfiles Zinc finger RING-type profile. 420 453 IPR001841 -
Gso13g1506 463 Pfam Copine 143 356 IPR010734 -
Gso13g1506 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 463 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1506 Gso-Chr13 30528663 30532502 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1506 K16280 - gmx:100820356 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0114 18 957254 961662 Gso13g1506 13 30528663 30532502 GST
Gso5g1473 5 38186167 38190864 Gso13g1506 13 30528663 30532502 PCT
Gso8g1101 8 10126093 10130918 Gso13g1506 13 30528663 30532502 PCT