Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1473 ATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTGTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAACGGTCTGAAAGAAGGCATGTTTCATCATATGGATCTGCTGGTTCTTCATCTTCACGGGATAGCTATGGATACCCTCAATCACCAAATGCATACCCACAACAAAATCCTTATAATACGCCTCTTCACCACCGTGCACCAGCTCCATTCCACGACTATTCACGGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCACTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGCATCAACACATGATCAAGATGTCTTCAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTTTGTCAAGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCAATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGCGGCCAATATCATGTCCTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACACAACATGGCCAGCTAAGTCCACAGGAAGAGAAGACAATTGATGCAATTGTAAAAGCCAGTGAGTATCCCCTTTCAATAGTTTTGGTTGGAGTTGGAGATGGACCATGGGATATGATGAAGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAGAGAGTATAGACTCAAGCAGAAAAGAGAGAGAGTTTGCACTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGACCTTGGCATATTGGGTAGTGCACGGAGAGGACATTCAGCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGCGCTTCCAGCAGCAGCACAATACCTCTTCCTTCAAACAGTTTTCAGCAGAGCACACCAACATATTATGATAATGTTAACGCAGAATCATCTTCAAGAAACTTATATGATAATAAGGTTTGCCCGATTTGTCTTACTAATGATAAGGATATGGCATTTGGTTGCGGGCACCAGACTTGCTGTGACTGTGGAGAAAACCTCGAATGCTGCCCCATTTGCCGAAGCACAATCACTACCAGAATAAAGCTTTACTAG 1245 0.4249 MLLELETWTALVVLFLLVLILKESIMGGKSSKRSERRHVSSYGSAGSSSSRDSYGYPQSPNAYPQQNPYNTPLHHRAPAPFHDYSRPKRRLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEEKTIDAIVKASEYPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSESIDSSRKEREFALSALMEIPSQYKATIDLGILGSARRGHSADRVPLPPPHYESASSSSTIPLPSNSFQQSTPTYYDNVNAESSSRNLYDNKVCPICLTNDKDMAFGCGHQTCCDCGENLECCPICRSTITTRIKLY* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1473 414 Pfam Zinc finger, C3HC4 type (RING finger) 368 409 - -
Gso5g1473 414 MobiDBLite consensus disorder prediction 40 72 - -
Gso5g1473 414 SUPERFAMILY vWA-like 148 256 IPR036465 -
Gso5g1473 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Gso5g1473 414 CDD RING-HC_RGLG_plant 370 414 IPR045317 GO:0061630|GO:0070534
Gso5g1473 414 ProSiteProfiles Zinc finger RING-type profile. 371 404 IPR001841 -
Gso5g1473 414 PANTHER RING-FINGER PROTEIN 26 136 - -
Gso5g1473 414 PANTHER RING-FINGER PROTEIN 136 414 - -
Gso5g1473 414 MobiDBLite consensus disorder prediction 30 85 - -
Gso5g1473 414 MobiDBLite consensus disorder prediction 316 342 - -
Gso5g1473 414 Pfam Copine 118 309 IPR010734 -
Gso5g1473 414 SUPERFAMILY RING/U-box 363 410 - -
Gso5g1473 414 PANTHER COPINE FAMILY PROTEIN 1 136 414 - -
Gso5g1473 414 PANTHER COPINE FAMILY PROTEIN 1 26 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1473 Gso-Chr5 38186167 38190864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1473 K16280 - gmx:100790937 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1473 5 38186167 38190864 Gso8g1101 8 10126093 10130918 GST
Gso5g1473 5 38186167 38190864 Gso18g0114 18 957254 961662 PCT
Gso5g1473 5 38186167 38190864 Gso13g1506 13 30528663 30532502 PCT