Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0114 ATGCATCTAGAGCTAGAGACTTGGACAATTTTGGTTGCTATTGTGTGCATCTTGGTCTTTGTTCTGAAGGAGATTGTTATGGGAGGGAAGAGCTCAAAAGGGAGTGGTAGGAGGTATGATTTTGGTGCTTCTTCATCTTCACGGGATAATAACTATGGTGGATACCATCCACAATCACCATACCCTTCTTATCAAACACCTCAGCACCCGCGTGCATCAGCTCCATTTTATGACTATGCACAGCCAAAAAGGAAGTTGGATAAGAAGTATTCCAGGATAGCTGATAATTACCGTTCTTTGGATGAGGTTACAGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACCAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTAGAAGTGGTCAAAACCCTTATGAACAAGCAATTTCTATTATCGGGAAAACTTTATCTGCTTTCGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCTACACACGATCAAGATGTATTTAGTTTCTATTCAGAAGAGAGGTTCTGCAATGGGTTTGAGGAAGTTCTGACACGATACAGACAAATTATTCCTTCCCTAAAACTTGCAGGACCCACTTCGTTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCGTTGATACACAAAATGGCAACTTAAGTCCGCAAGAGCAGAACACAATAGATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGAAATGATGAGGGAATTTGATGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAGGAATGTAGATTCAACCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATACAAGGCAACCCTAGAGCTTGGCATATTGGGTTCACGGAGGGGGCATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATAGTAGAACCTCTTCCAGCATCAGCACAAAATCTACAAGGTCTAACAGTTTTCAGCAGAGGACACCTACACATACTAGCTATGATAGCAGTGTTCACACAGAGACATCATCAAGTTCTTTATATGATAATAAGGTTTGCCCCATTTGTCTTACCAATGCAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAGTGTGGAGAGGACCTCCAATTCTGTCCCATTTGCCGGAGCACAATCCATACTAGAATAAGGCTTTACTAG 1380 0.4159 MHLELETWTILVAIVCILVFVLKEIVMGGKSSKGSGRRYDFGASSSSRDNNYGGYHPQSPYPSYQTPQHPRASAPFYDYAQPKRKLDKKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIRSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYSEERFCNGFEEVLTRYRQIIPSLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQNGNLSPQEQNTIDAIVKASEYPLSIVLVGVGDGPWEMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSTRKETDFALSALMEIPSQYKATLELGILGSRRGHSPDRVALPPPLYSRTSSSISTKSTRSNSFQQRTPTHTSYDSSVHTETSSSSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIRLY* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0114 459 MobiDBLite consensus disorder prediction 30 72 - -
Gso18g0114 459 MobiDBLite consensus disorder prediction 38 70 - -
Gso18g0114 459 SUPERFAMILY vWA-like 115 298 IPR036465 -
Gso18g0114 459 PANTHER COPINE FAMILY PROTEIN 1 27 459 - -
Gso18g0114 459 CDD vWA_copine_like 93 343 IPR010734 -
Gso18g0114 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 459 IPR013083 -
Gso18g0114 459 MobiDBLite consensus disorder prediction 369 407 - -
Gso18g0114 459 MobiDBLite consensus disorder prediction 357 407 - -
Gso18g0114 459 Pfam Zinc finger, C3HC4 type (RING finger) 413 453 - -
Gso18g0114 459 PANTHER RING-FINGER PROTEIN 27 459 - -
Gso18g0114 459 SMART VWA_4 114 317 IPR002035 -
Gso18g0114 459 ProSiteProfiles Zinc finger RING-type profile. 416 449 IPR001841 -
Gso18g0114 459 Pfam Copine 139 352 IPR010734 -
Gso18g0114 459 CDD RING-HC_RGLG_plant 415 459 IPR045317 GO:0061630|GO:0070534
Gso18g0114 459 SUPERFAMILY RING/U-box 405 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0114 Gso-Chr18 957254 961662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0114 K16280 - gmx:100798816 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0114 18 957254 961662 Gso13g1506 13 30528663 30532502 GST
Gso5g1473 5 38186167 38190864 Gso18g0114 18 957254 961662 PCT
Gso8g1101 8 10126093 10130918 Gso18g0114 18 957254 961662 PCT