Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0872 ATGGAAGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCTCTTTTTTACCCTTCACCCTCCTCTACTCTCTCATCAACTCCCCAGATTGTCCTTCTTTGACATTGATGATTACTCCTTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGTTGGAGCCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCCTTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAAATTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCTGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGACTTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACAAGCAAACCCATGGTTTTACACCGTAACTCATGAACATGCAAATTCCGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTATCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCGTCAAAATTTCTATGTTTGTAACCCATTGACTCAATCCTTAAAGGAGTTACCAGCTCGTTCAGTTAGGGTTGGGTCTCGTGCGTCTGTAGGGATGACAGTAAATGGAAACTCAACTAGTGCTGGCTACAAGATCCTATTGGTTGGTTGTGATGGAGAATATGAAATTTATGACTCAGTGACAAAGTCTTGGAGCCATCCAGAAAACATGCCTGCAGATATTAAGCTCCCGCTGTCACTCAATTTTAGGTCACACGCTGTTTCTATTGACAGCACCCTGTACTTCATGCATTCAGATCCCGAAGGGATTGTTTCGTATGATATGGCAACTGGGGTTTGGATGCAGTACATAATCCCAGCACCATTGCATCTGACTGACCACATGCTGGCTGAGTGCGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACATGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTGATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAGGTTCCTGCGTGTCTGGTGCCACATGGAAGAAAACGACAATGGGTAGCACATGGTACTGCATTTTATCCATGCCTCACTGCAATGGCTTGA 1362 0.4508 MEEEEEGLAMLITHLHHFSHSLSPLFFTLHPPLLSHQLPRLSFFDIDDYSLDDFCGLVMAAGKSGSSRMLEPLKHPSKKSRRDRSLGKSSGRSSRDEAMEQQIWKKLPEDLFEPVIARLPIATFFCFRSVCQRWNSLLTSQSFSQHCAQVPQANPWFYTVTHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYRQNFYVCNPLTQSLKELPARSVRVGSRASVGMTVNGNSTSAGYKILLVGCDGEYEIYDSVTKSWSHPENMPADIKLPLSLNFRSHAVSIDSTLYFMHSDPEGIVSYDMATGVWMQYIIPAPLHLTDHMLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPACLVPHGRKRQWVAHGTAFYPCLTAMA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0872 453 PANTHER BNAA07G08860D PROTEIN 40 453 - -
Gso8g0872 453 SUPERFAMILY F-box domain 92 149 IPR036047 GO:0005515
Gso8g0872 453 PANTHER F-BOX/KELCH-REPEAT PROTEIN 40 453 - -
Gso8g0872 453 SUPERFAMILY Galactose oxidase, central domain 129 434 IPR011043 -
Gso8g0872 453 Pfam F-box domain 104 143 IPR001810 GO:0005515
Gso8g0872 453 MobiDBLite consensus disorder prediction 72 99 - -
Gso8g0872 453 Gene3D - 142 443 IPR015915 GO:0005515
Gso8g0872 453 MobiDBLite consensus disorder prediction 67 99 - -
Gso8g0872 453 SMART fbox_2 107 147 IPR001810 GO:0005515
Gso8g0872 453 Gene3D - 104 141 - -
Gso8g0872 453 ProSiteProfiles F-box domain profile. 101 146 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0872 Gso-Chr8 8110199 8114131 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0872 - - gmx:100775721 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1258 5 36136692 36140605 Gso8g0872 8 8110199 8114131 GST
Gso18g0047 18 417588 422336 Gso8g0872 8 8110199 8114131 PCT
Gso13g1575 13 31064116 31068833 Gso8g0872 8 8110199 8114131 PCT
Gso8g0872 8 8110199 8114131 Gso18g0047 18 417588 422336 PCT
Gso8g0872 8 8110199 8114131 Gso13g1575 13 31064116 31068833 PCT