Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1575 ATGGAAGGGCTGGCCATGCTGAAGCAGCTCATTGCGCAGCTTCAACACCTCTTTGACACTTACCACTCTCAATCTTCTCTCATCTTTCAACAACAACACCCCAGATGGACGACCTCCCTTGACATTGAAGATAACTCTGTAGATGACTTCTGTGGCCTTGTAATGACAGCTGGAAAGTCTGGCAGTTTCAGGATGTCGGAGCCTGGAAAGCCTCCACCTACTAAGAAGTCTCGAAGAGATAGAAGCAGGGGCAAATCATCTGGAAGATCTTGTACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGTCTTCCCATTTCCACATTTTTCCGCTTCCGTTCTGTCTGCCGGCAGTGGAATTCCATGCTGAATTCTCAAAGTTTTTCTCAGCATTGTACTCAAGTCACACAAGAAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTACGACCCTTCTTTGAAAAAATGGCATCATCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCTGTGGCTTCTTCTGGCGGCTTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGCTCGATCAGTCAAGGTCTGGTCTCGTGTTGCTGTAGGGATGATGGCAAATGGAAACTTTGCTGGTTCAGGCTACAAGATCGTATGGGTAGGTTGTGATGGAGAATATGAAGTATACGACTCAGTCAGAAATTCTTGGAGTCGTCCAGGAAACATGCCTGTGGGCATGAAGCTGCCATTGTCGCTCAACTTTAGGTCTCAAGCTGTCTCTATTGGCAGCACACTTTATTTCATGCGTTCAGACCCAGACGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCACTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGGTCATGCTTGTGGGTTTGCTCACGAAGAATGCAGCCACTTGTGTATGCATATGGGAGTTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTCGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGTGTGA 1353 0.4545 MEGLAMLKQLIAQLQHLFDTYHSQSSLIFQQQHPRWTTSLDIEDNSVDDFCGLVMTAGKSGSFRMSEPGKPPPTKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLFEAVIARLPISTFFRFRSVCRQWNSMLNSQSFSQHCTQVTQENPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASSGGLVCFLDIGHRNFFVCNPLTQSFKELPARSVKVWSRVAVGMMANGNFAGSGYKIVWVGCDGEYEVYDSVRNSWSRPGNMPVGMKLPLSLNFRSQAVSIGSTLYFMRSDPDGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQVMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVV* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1575 450 SUPERFAMILY Galactose oxidase, central domain 128 431 IPR011043 -
Gso13g1575 450 Gene3D - 101 140 - -
Gso13g1575 450 SUPERFAMILY F-box domain 96 175 IPR036047 GO:0005515
Gso13g1575 450 ProSiteProfiles F-box domain profile. 98 143 IPR001810 GO:0005515
Gso13g1575 450 Gene3D - 154 437 IPR015915 GO:0005515
Gso13g1575 450 PANTHER BNAA07G08860D PROTEIN 38 448 - -
Gso13g1575 450 SMART fbox_2 104 144 IPR001810 GO:0005515
Gso13g1575 450 MobiDBLite consensus disorder prediction 61 92 - -
Gso13g1575 450 Pfam F-box domain 101 140 IPR001810 GO:0005515
Gso13g1575 450 PANTHER F-BOX/KELCH-REPEAT PROTEIN 38 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1575 Gso-Chr13 31064116 31068833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1575 - - gmx:100795488 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0047 18 417588 422336 Gso13g1575 13 31064116 31068833 GST
Gso13g1575 13 31064116 31068833 Gso5g1258 5 36136692 36140605 PCT
Gso13g1575 13 31064116 31068833 Gso8g0872 8 8110199 8114131 PCT
Gso5g1258 5 36136692 36140605 Gso13g1575 13 31064116 31068833 PCT
Gso8g0872 8 8110199 8114131 Gso13g1575 13 31064116 31068833 PCT