Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1258 ATGGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCCTTTTACCCTTCACCCTCCAGTCTCTCATCAACTCCCCAGATTCTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTCCAGGATGATGGAACCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCTGTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAAATTTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTGTCTTCTCAAAGTTTTTCTCTGCATTGTGCTCAAGTCAAACAAGCAAACCCATGGTTTTACACTGTAACTCATGAACATGCAAATTCTGGAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCATCCCACTATATCAACACTGCCCGCAGAGTTGATAGTTTTACCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCATCAAAATTTCTATGTTTGTAACCCATTGATTCAATCCTTAAAGGAGTTACCAGCTCGGTCAGTTAGGGTTTGGGCTCGTGATGCTGTAGGAATGACAGTAAATGGGAACTCAACTGGTGCTGGTTACAAGATCCTATTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCCCTAACAAAGTCTTGGAGCCATCCAGAAAAAATGCCTTCAGATATTAAGCTGCCGCTGTCACTCAATTTTAGGTCACACGCTGTTTCTATTAACAGCACCCTGTACTTCATGCATTCAGATCCCAAAGGGATTGTTTCGTATGATATGGCAACTGGGGTTTGGACACAGTACATAATCCCAGCGCCATTGCATCTGACTGACCACATGCTGGCCGAGTGCGATGGCCGGCTATTGCTTGTTGGGCTGCTCACGAAGAATGCAGCCACATGCATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTCTGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTCATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAAGTTCCTTGGTGTCTGGTGCCACATGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCATGCCTCTCTGCAATGGCCTGA 1359 0.4489 MEEEEGLAMLITHLHLHHFSHSLSPPFTLHPPVSHQLPRFSFFDIDDYSVDDFCGLVMAAGKSGSSRMMEPLKHPSKKSRRDRSCGKSSGRSSRDEAMEQQIWKNLPEDLFEPVIARLPIATFFRFRSVCQRWNSLLSSQSFSLHCAQVKQANPWFYTVTHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYHQNFYVCNPLIQSLKELPARSVRVWARDAVGMTVNGNSTGAGYKILLVGCDGEYEIYDSLTKSWSHPEKMPSDIKLPLSLNFRSHAVSINSTLYFMHSDPKGIVSYDMATGVWTQYIIPAPLHLTDHMLAECDGRLLLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPWCLVPHGRKRQWIAHGTAFYPCLSAMA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1258 452 MobiDBLite consensus disorder prediction 66 98 - -
Gso5g1258 452 Gene3D - 141 441 IPR015915 GO:0005515
Gso5g1258 452 Gene3D - 103 140 - -
Gso5g1258 452 PANTHER BNAA07G08860D PROTEIN 39 451 - -
Gso5g1258 452 SUPERFAMILY Galactose oxidase, central domain 167 433 IPR011043 -
Gso5g1258 452 PANTHER F-BOX/KELCH-REPEAT PROTEIN 39 451 - -
Gso5g1258 452 SMART fbox_2 106 146 IPR001810 GO:0005515
Gso5g1258 452 SUPERFAMILY F-box domain 97 179 IPR036047 GO:0005515
Gso5g1258 452 Pfam F-box domain 103 142 IPR001810 GO:0005515
Gso5g1258 452 MobiDBLite consensus disorder prediction 71 98 - -
Gso5g1258 452 ProSiteProfiles F-box domain profile. 100 145 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1258 Gso-Chr5 36136692 36140605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1258 - - gmx:100800464 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1258 5 36136692 36140605 Gso8g0872 8 8110199 8114131 GST
Gso18g0047 18 417588 422336 Gso5g1258 5 36136692 36140605 PCT
Gso13g1575 13 31064116 31068833 Gso5g1258 5 36136692 36140605 PCT
Gso5g1258 5 36136692 36140605 Gso18g0047 18 417588 422336 PCT
Gso5g1258 5 36136692 36140605 Gso13g1575 13 31064116 31068833 PCT