Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0044 ATGGCTGAGGAGACTCCAAACCAGACAACCACACCACCCCCTCCTCAAGAGTCAGTGGTGCAAGTGGAGGAAGTGGTGGTAACCGATGTTCCACAGCCCGACAAAACAACAACTACAGTTCCAGTTGAAAGAGATTCGCAACCTCAACCTTATGAGCCAGAGAAGAAGAAGCCCGTTGAGGAAACCGTCACTCTCGAGACTCACCTCTCCAAACCCAACAATGCTGACCACACCAACAACATCCCTGAATTCATTGAAGAAAGCACCAAACTTTCTGACCTCCCAGAAAACGAAAACAAGGCTCTCCAAGAGCTCAAGAAGCTCGTTCAAGACGCTCTCAACAATCACCACTTCTCTTCCAAACATGATAACAAGAAGCCACCACAAACAACTGCTGCTGACAACAAGGAAGAACAACAACCACAAGAAGTTGTAACTGAAACTAAACCTGATGCTGCCCCAGCAAAAACCGAAGAGGAGCATGTTGAAACAAAGAAGGAAGAGGAAAAGGAGGAAGAAGAAAAGGAGCAAGTGACAGAAACGAAGGAAGAAGAAGCTGCGGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTTTCTTCTACCGTTCAGCCTCAAGCTGAAGAGAAAGCTTCAGAACCAGAAGCCACCAAAGAAGAATCTTCACCGCCACTTCCACCTGAAGAGGCTTCCATTTGGGGGATACCGCTGCTTGCAGACGAGAGGAGCGATGTGATTCTGCTTAAGTTTCTGCGCGCGAGAGAGTTCAAGGTGAAGGAGGCATTCACCATGCTGAAGAACACGATCCAGTGGAGGAAGGAGTTTGGGATGGAGGAGCTGATGGAAGAGAAGCTCGGGGATGAGTTGGAGAAGGTGGTGTTCATGCACGGCTTTGACAAGGAGGGTCACCCTGTGTGTTACAACATATATGAGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGCTTGATTTCAACCCTGGTGGCATATGCACCATTGTTCATGTTAATGACCTCAAGAACTCTCCTGGACTTGCCAAGTGGGAACTTAGACAAGCCACCAAACATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTTGCCAAACAGGTTTTTATTAATGTGCCTTGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGGACTAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATATATAGCTCCGGAGCAGCTTCCGGTGAAGTACGGTGGACTAGGCAAAGATGGGGAGTTCGGAAATACCGATGCTGTCACAGAAATCACAGTGAGGCCGGCAGCAAAACATACTGTGGAATTTTCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTCAGAGTAATAGGATGGGAAGTAAGTTATGGCGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGGAAGGTTGCTTCATCAGAAGAACCAGTTCTTTGCAACAGTTTTAAGGTTGGTGAACCTGGGAAAGTTGTTCTCACTATTGACAACACAAGCTCTAAGAAGAAGAAGCTATTGTACCGCTTGAAGACCAAGCCTTCCCTCTCTGACTAA 1728 0.467 MAEETPNQTTTPPPPQESVVQVEEVVVTDVPQPDKTTTTVPVERDSQPQPYEPEKKKPVEETVTLETHLSKPNNADHTNNIPEFIEESTKLSDLPENENKALQELKKLVQDALNNHHFSSKHDNKKPPQTTAADNKEEQQPQEVVTETKPDAAPAKTEEEHVETKKEEEKEEEEKEQVTETKEEEAAVDDDGAKTVEAIEETVVAVSSTVQPQAEEKASEPEATKEESSPPLPPEEASIWGIPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIQWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYEEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVHVNDLKNSPGLAKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLGKDGEFGNTDAVTEITVRPAAKHTVEFSVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSLSD* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0044 575 MobiDBLite consensus disorder prediction 28 236 - -
Gso8g0044 575 MobiDBLite consensus disorder prediction 116 132 - -
Gso8g0044 575 MobiDBLite consensus disorder prediction 66 86 - -
Gso8g0044 575 SUPERFAMILY CRAL/TRIO N-terminal domain 91 290 IPR036273 -
Gso8g0044 575 SMART CRAL_TRIO_N_2 250 275 IPR011074 -
Gso8g0044 575 MobiDBLite consensus disorder prediction 31 45 - -
Gso8g0044 575 CDD SEC14 295 459 IPR001251 -
Gso8g0044 575 Gene3D GOLD domain 475 569 - -
Gso8g0044 575 ProSiteProfiles GOLD domain profile. 468 569 IPR009038 -
Gso8g0044 575 MobiDBLite consensus disorder prediction 89 105 - -
Gso8g0044 575 MobiDBLite consensus disorder prediction 48 64 - -
Gso8g0044 575 PRINTS Cellular retinaldehyde-binding protein signature 253 275 - -
Gso8g0044 575 PRINTS Cellular retinaldehyde-binding protein signature 416 435 - -
Gso8g0044 575 MobiDBLite consensus disorder prediction 1 20 - -
Gso8g0044 575 SMART sec14_4 294 461 IPR001251 -
Gso8g0044 575 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 470 568 IPR036598 -
Gso8g0044 575 Pfam CRAL/TRIO domain 298 458 IPR001251 -
Gso8g0044 575 PANTHER PATELLIN-1 1 575 IPR044834 GO:0008289
Gso8g0044 575 Coils Coil 155 185 - -
Gso8g0044 575 Gene3D - 213 281 - -
Gso8g0044 575 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 289 464 IPR001251 -
Gso8g0044 575 Gene3D - 284 474 IPR036865 -
Gso8g0044 575 MobiDBLite consensus disorder prediction 152 197 - -
Gso8g0044 575 Pfam CRAL/TRIO, N-terminal domain 235 274 IPR011074 -
Gso8g0044 575 PANTHER PATELLIN-3 PROTEIN 1 575 - -
Gso8g0044 575 SUPERFAMILY CRAL/TRIO domain 299 461 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0044 Gso-Chr8 414989 418467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0044 254 453 Acyl Lipid Metabolism Gene Families AT1G55840 26.636 9.93e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0044 - - gmx:100788197 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1682 5 40112675 40116278 Gso8g0044 8 414989 418467 GST
Gso8g0044 8 414989 418467 Gso4g1732 4 47395733 47399620 PCT
Gso8g0044 8 414989 418467 Gso6g1354 6 13295007 13298942 PCT
Gso4g1732 4 47395733 47399620 Gso8g0044 8 414989 418467 PCT
Gso6g1354 6 13295007 13298942 Gso8g0044 8 414989 418467 PCT