Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1682 ATGGCCGAGGAAGCTCCAAACCAGACAACCACACCACCACCTCCTCAAGAGTCAGTGGCGCAAGTGGAGGAAGTGGTAGTAACCGATGTTCCACAGCCACCAGAAAAAACAACAACCACTGTTCCAGTTGAAGAAACCGTCACTCTCGAGACTCACCTCTCCAAACCCAATAATGCTGACGACAACGACAACATCATCCCTGAATTCAAGGAAGAAAGCACCAAACTCTCTGAACTCCCAGAAAACGAAAACAAGGCACTCCAAGACCTCAAGAAGCTCGTTCAAGACGCTCTCAACAACCACCACTTCTCTTCCAAAGAAGATAATAAGAACCCACCACCACAAACTGCTGCTCACAAGGAAGAAGTTGTAACTGAAACTAAAACTGATGCTGCCCCAGCAAAAACCGAAGAGGAGCAAGCTGAAACAAAGGAGGAAGAGGAAAAGAAGGAGGAAGTGAAAGAAACGAATGAAGAAGCTGCGGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTACCGTTCAGCCTCAAGCTGAAGAGAAAGCTTCATCGCCACTTCCACCTGAAGAGGTTTCCATTTGGGGGATACCGCTGCTTGCAGATGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGCGCGCGAGGGAGTTCAGGGTGAAGGAGGCATTCACCATGCTGAAGAACACGATCCAGTGGAGGAAGGAGTTTGGGATGGAGGAGTTGATGGAGGAGAAGCTCGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTTTGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGCTGGATTTCAACCCTGGTGGCATATGCACCATTGTTCATGTTAATGACCTCAAGAATTCCCCTGGACTTGCCAAGTGGGAACTTAGACAAGCCACCAAACATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTTGCCAAACAGGTGTTTATTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGGACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATACATAGCTCCGGAGCAGCTTCCCGTGAAGTACGGTGGACTAAGCAAAGATGGGGAGTTCGGAAATATCGATGCTGTCACAGAAATCACAGTGAGGCCGGCAGCAAAACATTCGGTGGAATTTTCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTTAGAGTAATAGGTTGGGAAGTAACTTATGGGGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAGGTTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAACACAAGCTCTAAGAAGAAGAAGCTCTTGTATCGCTTGAAGACCAAGCCTTCCCCTTCTGACTAA 1620 0.471 MAEEAPNQTTTPPPPQESVAQVEEVVVTDVPQPPEKTTTTVPVEETVTLETHLSKPNNADDNDNIIPEFKEESTKLSELPENENKALQDLKKLVQDALNNHHFSSKEDNKNPPPQTAAHKEEVVTETKTDAAPAKTEEEQAETKEEEEKKEEVKETNEEAAVDDDGAKTVEAIEETVVAVSSTVQPQAEEKASSPLPPEEVSIWGIPLLADERSDVILLKFLRAREFRVKEAFTMLKNTIQWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVHVNDLKNSPGLAKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNIDAVTEITVRPAAKHSVEFSVTENCLLSWELRVIGWEVTYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1682 539 MobiDBLite consensus disorder prediction 121 167 - -
Gso5g1682 539 PANTHER PATELLIN-3 PROTEIN 1 539 - -
Gso5g1682 539 SUPERFAMILY CRAL/TRIO N-terminal domain 75 254 IPR036273 -
Gso5g1682 539 MobiDBLite consensus disorder prediction 64 90 - -
Gso5g1682 539 Gene3D - 136 245 - -
Gso5g1682 539 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 253 428 IPR001251 -
Gso5g1682 539 MobiDBLite consensus disorder prediction 32 61 - -
Gso5g1682 539 PRINTS Cellular retinaldehyde-binding protein signature 217 239 - -
Gso5g1682 539 PRINTS Cellular retinaldehyde-binding protein signature 380 399 - -
Gso5g1682 539 Pfam CRAL/TRIO domain 262 422 IPR001251 -
Gso5g1682 539 SMART sec14_4 258 425 IPR001251 -
Gso5g1682 539 Coils Coil 134 163 - -
Gso5g1682 539 CDD SEC14 259 423 IPR001251 -
Gso5g1682 539 Gene3D - 248 437 IPR036865 -
Gso5g1682 539 PANTHER PATELLIN-1 1 539 IPR044834 GO:0008289
Gso5g1682 539 Pfam CRAL/TRIO, N-terminal domain 198 238 IPR011074 -
Gso5g1682 539 SMART CRAL_TRIO_N_2 214 239 IPR011074 -
Gso5g1682 539 Gene3D GOLD domain 438 533 - -
Gso5g1682 539 ProSiteProfiles GOLD domain profile. 404 533 IPR009038 -
Gso5g1682 539 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 436 532 IPR036598 -
Gso5g1682 539 MobiDBLite consensus disorder prediction 1 167 - -
Gso5g1682 539 SUPERFAMILY CRAL/TRIO domain 263 425 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1682 Gso-Chr5 40112675 40116278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1682 218 417 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 2.06e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1682 - - gmx:100804544 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1682 5 40112675 40116278 Gso5g1682 5 40112675 40116278 ECH
Gso5g1682 5 40112675 40116278 Gso8g0044 8 414989 418467 GST
Gso5g1682 5 40112675 40116278 Gso4g1732 4 47395733 47399620 PCT
Gso5g1682 5 40112675 40116278 Gso6g1354 6 13295007 13298942 PCT
Gso4g1732 4 47395733 47399620 Gso5g1682 5 40112675 40116278 PCT
Gso6g1354 6 13295007 13298942 Gso5g1682 5 40112675 40116278 PCT