Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1732 ATGGCTGAGGAAGTTCCAAAGACAAGCACAACTCAAGAGGAGGTGGTGGTCTCTGACGTGGCACCTGCTGAGAAACCAGACACCACCAACGTTGTTGTTGTTCCCCTAGAGAAAGACGCACAACCACAACAAAATGAAGAAGAAACCTCGCCAGAGAAGAAGAAAGAGAACGTTACCGAAACTGAAACCGAGTCCGAGGTTTCAAAACCAAGTGGCGACGACAACGTTCCTGAATCCGGTTCTTTCAAGGAAGAAAGCACCATTGTCTCCGACCTACCAGAGACCGAGAAAAAGGCTCTGCAAGAACTCAAACAACTTATTCAAGAAGCGCTCAACAAACACGAGTTCTCCGCGGTGCCAACAAGTAACCCTCCCAAAGATGAAAAACCCGACAACAAGGAAGAACAGAACCCCGCGGAGGTAGAAGAGAAGCAACAAGTTTCTGATGCTGCTGCTGACGTGGCAGAAGCGACAGAAAAAGAAGCTGCAGAAGTTAAGGTAACCGAAACTGAGGTTGTTGAAGAGAAAGTGGCGGTGTCTGCTTCTTCTGCTGATGAAGACGGAGCTAAAACGGTGGAAGCTATCGAAGAAAGCGTTGTGTCTGTGACTGTTTCCGAGGAAGCAAAGGTGGAAGCTGTTTCTGCTTCACCCGAAGAAGTTTCCATCTGGGGTGTTCCTCTTCTTGCTGACGAGAGGAGCGACGTGATTCTCTTAAAGTTTCTGCGTGCTCGGGACTTCAAGGTGAAGGAGGCATTCGCGATGATAAAGGGCACGATTCGGTGGAGGAAGGAGTTCAAGATGGAGGAGTTGTTATTGGAGGATTTAGGTGATGATTTGGAGAAAGCGGTGTACATGCATGGATTCGACAAGGAGGGTCACCCCGTGTGTTACAATATCTATGGGGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGTATAGATTTCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGACTTTAACCCTGGTGGGATAAGCACCATTGTTCAGGTTAATGATCTCAAGAATTCTCCTGGCCCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTCCAGCTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCTTGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCTAAATCAGCTGAGACCCTTTTGAGATACATTGCTGCGGAGCAACTTCCGGTCAAGTATGGGGGACTAAGCAAAGATGGCGAGTTCGGAATTTCCGATGCTGTTACAGAAATTACAGTGAGGCCAGCAGCAAAACATACCGTAGAGTTTCCAGTTACTGAGAACTCTCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGATGTAAGCTATGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGTTATACTGTGATCATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTAAAGGTCAAGCCTTCTTCTGACTGA 1674 0.4713 MAEEVPKTSTTQEEVVVSDVAPAEKPDTTNVVVVPLEKDAQPQQNEEETSPEKKKENVTETETESEVSKPSGDDNVPESGSFKEESTIVSDLPETEKKALQELKQLIQEALNKHEFSAVPTSNPPKDEKPDNKEEQNPAEVEEKQQVSDAAADVAEATEKEAAEVKVTETEVVEEKVAVSASSADEDGAKTVEAIEESVVSVTVSEEAKVEAVSASPEEVSIWGVPLLADERSDVILLKFLRARDFKVKEAFAMIKGTIRWRKEFKMEELLLEDLGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRYRFLRWRIQFLEKSIRKLDFNPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1732 557 MobiDBLite consensus disorder prediction 72 88 - -
Gso4g1732 557 MobiDBLite consensus disorder prediction 89 103 - -
Gso4g1732 557 Pfam CRAL/TRIO domain 281 441 IPR001251 -
Gso4g1732 557 SMART sec14_4 277 444 IPR001251 -
Gso4g1732 557 SMART CRAL_TRIO_N_2 233 258 IPR011074 -
Gso4g1732 557 SUPERFAMILY CRAL/TRIO domain 283 444 IPR036865 -
Gso4g1732 557 PANTHER PATELLIN-3 PROTEIN 17 556 - -
Gso4g1732 557 MobiDBLite consensus disorder prediction 1 16 - -
Gso4g1732 557 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 452 554 IPR036598 -
Gso4g1732 557 PANTHER PATELLIN-1 17 556 IPR044834 GO:0008289
Gso4g1732 557 MobiDBLite consensus disorder prediction 41 71 - -
Gso4g1732 557 Gene3D - 197 456 IPR036865 -
Gso4g1732 557 Gene3D GOLD domain 457 553 - -
Gso4g1732 557 CDD SEC14 283 442 IPR001251 -
Gso4g1732 557 Pfam CRAL/TRIO, N-terminal domain 216 256 IPR011074 -
Gso4g1732 557 ProSiteProfiles GOLD domain profile. 451 552 IPR009038 -
Gso4g1732 557 SUPERFAMILY CRAL/TRIO N-terminal domain 88 273 IPR036273 -
Gso4g1732 557 MobiDBLite consensus disorder prediction 126 167 - -
Gso4g1732 557 MobiDBLite consensus disorder prediction 1 167 - -
Gso4g1732 557 PRINTS Cellular retinaldehyde-binding protein signature 236 258 - -
Gso4g1732 557 PRINTS Cellular retinaldehyde-binding protein signature 399 418 - -
Gso4g1732 557 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 272 447 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1732 Gso-Chr4 47395733 47399620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1732 237 436 Acyl Lipid Metabolism Gene Families AT1G55840 28.241 1.55e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1732 - - gmx:100805585 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1732 4 47395733 47399620 Gso6g1354 6 13295007 13298942 GST
Gso5g1682 5 40112675 40116278 Gso4g1732 4 47395733 47399620 PCT
Gso8g0044 8 414989 418467 Gso4g1732 4 47395733 47399620 PCT
Gso4g1732 4 47395733 47399620 Gso5g1682 5 40112675 40116278 PCT
Gso4g1732 4 47395733 47399620 Gso8g0044 8 414989 418467 PCT