Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1354 ATGGCCGAGGAAGTTCCAAAGACCAGCACAACTCCAGAGGAGGTGGTGGTCTCTGACGTGGCACCTGCTGACGAGAAACCAGACACCACCACCGACGTTGTTGTTCCCGTAGAGAAAGACGCACAACAAGAACAAGAAACCTCGCCAGAGAAGGAGAAAGAGAACGTTCCCGAAACAGCTGAAACCGAGTCCGAGGTTGTTTCAAAACCAAGCGGTGACGACAACGTTCCTGAATCCGGTTCTTTCAAGGAGGAAAGCACCATTGTTTCCGACCTACCTGAAACCGAGAAAAAGGCTCTGCAAGAACTCAAACAACTCATTCAAGAAGCGCTCAACAACCACGAGTTATCCGAGGTACCTACAACTAACCCTCCCAAAGATGAAAAACCCGAACACAAGGAAGAACAGAAACCCGTGGAGGAAGAAAAGAAGGAACATGCTGCTGACGTGGCAGAAGAGACAGAAAAAGAAGCTGCAGAAGTTACGGTAACCGAAACTGAGGTTGTTGAAGAGAAAGTGGCGGTTTCTGCTTCTGCTGACGAGGATGGAGCGAAAACCGTTGAAGCCATCGAAGAAAGCGTTGTGTCTGTGACAGTGACTGTCTCCGAGGAACCAAAGGTGGAAGCTGTTTCACTTTCTGCTTCTCCCGAAGAGGTTTGCATTTGGGGTGTGCCGCTTCTCGCTGATGACAGAAGCGACGTGATTCTGTTGAAGTTTCTTCGTGCTCGGGACTTCAAGGTGAAGGAGGCATTGGCGATGATAAAGAGCACGATTCGGTGGAGGAAGGAGTTCAAGATGGAGGAGCTGTTGGAGGAGGATTTGGGTGGTGATGGTTTGGAGAAGGCGGTGTACATGCATGGGTTCGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGTGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGTATAGGTTTCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGATTTTAACCCTGGTGGGATATGCACCATTGTTCAGGTTAATGACCTCAGGAATTCTCCTGGCCCTTCTAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGCTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGTCCCTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCCAAATCAGCTGAGACCCTTTTGAGGTACATTGCTGCAGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGAGAGTTCGGAATTTCGGATGCTGTTACAGAAATTACAGTGAGGTCAGCAGCAAAACATACCGTGGAGTTTCCAGTTACTGAGAACTCGCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGACGTGAGCTACGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGCTATACTGTGATCATCCAGAAGGCCAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGGTCAAGCCTTCTTCTGACTGA 1674 0.4827 MAEEVPKTSTTPEEVVVSDVAPADEKPDTTTDVVVPVEKDAQQEQETSPEKEKENVPETAETESEVVSKPSGDDNVPESGSFKEESTIVSDLPETEKKALQELKQLIQEALNNHELSEVPTTNPPKDEKPEHKEEQKPVEEEKKEHAADVAEETEKEAAEVTVTETEVVEEKVAVSASADEDGAKTVEAIEESVVSVTVTVSEEPKVEAVSLSASPEEVCIWGVPLLADDRSDVILLKFLRARDFKVKEALAMIKSTIRWRKEFKMEELLEEDLGGDGLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRYRFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLRNSPGPSKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRSAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1354 557 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 271 447 IPR001251 -
Gso6g1354 557 MobiDBLite consensus disorder prediction 89 103 - -
Gso6g1354 557 Gene3D GOLD domain 457 553 - -
Gso6g1354 557 Pfam CRAL/TRIO domain 281 441 IPR001251 -
Gso6g1354 557 ProSiteProfiles GOLD domain profile. 451 552 IPR009038 -
Gso6g1354 557 SMART CRAL_TRIO_N_2 232 257 IPR011074 -
Gso6g1354 557 PANTHER PATELLIN-1 13 556 IPR044834 GO:0008289
Gso6g1354 557 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 452 554 IPR036598 -
Gso6g1354 557 Pfam CRAL/TRIO, N-terminal domain 220 255 IPR011074 -
Gso6g1354 557 MobiDBLite consensus disorder prediction 1 164 - -
Gso6g1354 557 MobiDBLite consensus disorder prediction 121 164 - -
Gso6g1354 557 MobiDBLite consensus disorder prediction 106 120 - -
Gso6g1354 557 SUPERFAMILY CRAL/TRIO N-terminal domain 88 273 IPR036273 -
Gso6g1354 557 MobiDBLite consensus disorder prediction 43 60 - -
Gso6g1354 557 CDD SEC14 279 442 IPR001251 -
Gso6g1354 557 SUPERFAMILY CRAL/TRIO domain 283 444 IPR036865 -
Gso6g1354 557 PANTHER PATELLIN-3 PROTEIN 13 556 - -
Gso6g1354 557 Coils Coil 97 117 - -
Gso6g1354 557 Gene3D - 216 456 IPR036865 -
Gso6g1354 557 SMART sec14_4 277 444 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1354 Gso-Chr6 13295007 13298942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1354 236 436 Acyl Lipid Metabolism Gene Families AT1G55840 27.778 4.63e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1354 - - gmx:100786707 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1732 4 47395733 47399620 Gso6g1354 6 13295007 13298942 GST
Gso5g1682 5 40112675 40116278 Gso6g1354 6 13295007 13298942 PCT
Gso8g0044 8 414989 418467 Gso6g1354 6 13295007 13298942 PCT
Gso6g1354 6 13295007 13298942 Gso5g1682 5 40112675 40116278 PCT
Gso6g1354 6 13295007 13298942 Gso8g0044 8 414989 418467 PCT