Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2216 ATGATTGAATTTAAGGGTGAATTTGAAGAATCAGTGGTGACCCTTTTGATTTTGTGGCTGTTGGTAGCTGTTATTTTCATCTCTTTGGTTATTGGGATGGGTAAGAATGATGGCAAGAAACAACAGCACCTTCTTCTTGGAGGTGTTGCTGCTGGTGGTAGTGGTGGCAGAACCAACATCAATGGCTTTATTCCCTCCTTTCACACTCTCTCTGGTTACCTGAAAATTGTTTCATCGGGTGCTTCCACTGTTGCTCGGTCTGCTGCTGCCTCTTTTGCGTCATCAATTTTGGATAAGGATGATGATGCTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCGGCCATGGAGAAGTCATGCGGCAAGTACTTCTTCTAGGCTATTGGTCTGGTTTCCAGGTTTGGGATGTTGATGATTCAAATAATGTCCGTGACCTAGTTTCCAGACAGGATGGTCCTGTTTCTTTTATGCAAATGGTACCAACTCCAATTGTATCAAAGAGACCAGAGGACAAGTTTGCAGACAAGCGTCCATTGTTGGTAGTTTGTACGGATGGTTTGTTGGCTGGAGGAGACAAAACACAAGATGGGTTGGGTGCCACTTGCAATGGGGGCACTTTAAACCATCATGCCCAAGTGAATGGAAACTATCTGCCAACTACTGTTCAATTTTATTCTATGAGGTCCCGAACAAATGTTCATGTACTAAAGTTTAGATCAGTTGTTTATTCTGTAAGATGCAGTTCTCGAATAGTAACTGTTTCTCAAGCTACTCAGATACACTGTCTTTCTGCCACAACTTTAGAAAGAGAGTATACTTTACTTACCAATCCTATTGTCACTCATTGTCTCGGTTCTGGAGGCATTGGCTTTGGACCACTTGCAGTGGGTCCTAGATGGCTGGCCTATAGTGGAAGCCCAGATGCAACAGCCACTTCTGGGCATGTCAGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGGAGTTTGGTCGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACACTTGGAGATATGGGGTATAAAAAACTTGCCAGATACTGCTCGGAACTTCGCTCAGATAGCAGCGGTTCTATACATTTGGTAAATTCTAGCCCAAAAGGAAATGGAATCGTTAACGGCCATTCAACAGATGCGGATAACATTGGGATGGTCATTGTCAGAGATATAGTCAGTAAAAATGTCATTTCCCAATTCCGGGCCCACAAGAGTCCCATTTCAGCTTTATGCTTTGATCCTAGTGGGACCATATTGCTGACTGCTTCTGTTCAGGGACACAACATTAATGTTTTTAAGATAATCCCTGGATATGAGAGAGTGTCAGCATCTGATGCTGACCCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCTTGACAAATGCAGTTATTCAAGATATCAGTTTTAGTGCTGATAGCAGGTGGATTATGATAAGTTCCTCAAGGGGCACTAGCCATCTATTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTGTCATGTGACAATAGTTTAACAGAAAAAAATGGTGGATTGGATATCATTAATAATCAAGCAGTTCGTTGGCCTCATAGTTCAGCCTTAGAAATTTGTAAACCACAGAGCCTCTGTGCTGCTGGTCCTCCAATCACACTTTCTGTCGTAAGCAGAATTAGGAATGGATCTAATGGTTGGAGAAGCACGGTAACCGGAGCTGCTGCAGCTGCAACAAATAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCCGTAACTTTAAAGACAGCAGTACCTTGTATGTTAATGGGAACTATTCCAAGGAAAAGCATCATCTGTTGGTCTTTTCACCCACCAGTTCTATGATACAATATGCTCTGCAGACAATTAACAGTCAAGGCTCAGGTGTTGTTTCTGGAGTAACACCTGCTTATGAATCTGCCCCACTGACCGATGCAAGAGTAGTTGTTGAGCCTATCAAGAAATGGAATATAAGCCTGGCATATAGTTGGAGAGAGGGAGAAGATACTATTGACATATATGGAGAGAATGGAGTTTCAGACAGCAATAAATTATATTCAGAGGAAGTGAAGAAGGATAATATCATTAGCCCTAAAATGAAGAATGTAACTGTGAAATGGAATCCCTGTTCTGAGAAAGAGCATCAGTTTTATATTTCAGAAGCTGAACTGCAAATGCATCAAGCTAAGACGCCATTGTGGGGAAAGACTGGGATATATTTTCATTCAGTGGGTAAAGAGGCTACTTTGATGATGGATGAAGAAGCTGCTCTCGGAGGGGAATTTGAGATCGAAAAGATTCCAACTCGTGTGATACAAGCTAGGTCAAAAGACTTGGTTCCAATTTTTGACTATATTCAGACCTCAAAATTTCAACAAATAAGGACTCTTGTTAATAACAAGTTAAATGAACAACTTCTGCATCAAAGTTCCTTTGAAAAGGGAAGGATTTCACCCAGGGGCATTTTGGGTTTTCCTGATTGCATAAATAATTCTGGTGAAACGATTGCTGAGTTTAAAAGTGGGATTGAAGGAAATGAGCGGGGTGATAGTTTGATTCCAGCAGAAACAAAGGCTTTCGTAAATAACAATAACACCCTTAAACCAAATACTTGGCCAGAGATTGTAAATAATAGAAGAGAGAACTTAAACATGGATGTTCATCAAATGTTTGTAAATAGTGACAGAAAAGGCCTGAAACTGGAGAATCACTGCAAGGAAAAAGGAGATGAATTTGAATGA 2814 0.4161 MIEFKGEFEESVVTLLILWLLVAVIFISLVIGMGKNDGKKQQHLLLGGVAAGGSGGRTNINGFIPSFHTLSGYLKIVSSGASTVARSAAASFASSILDKDDDADRDRVIWAGFDTLEGGHGEVMRQVLLLGYWSGFQVWDVDDSNNVRDLVSRQDGPVSFMQMVPTPIVSKRPEDKFADKRPLLVVCTDGLLAGGDKTQDGLGATCNGGTLNHHAQVNGNYLPTTVQFYSMRSRTNVHVLKFRSVVYSVRCSSRIVTVSQATQIHCLSATTLEREYTLLTNPIVTHCLGSGGIGFGPLAVGPRWLAYSGSPDATATSGHVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVTLGDMGYKKLARYCSELRSDSSGSIHLVNSSPKGNGIVNGHSTDADNIGMVIVRDIVSKNVISQFRAHKSPISALCFDPSGTILLTASVQGHNINVFKIIPGYERVSASDADPSYVHLYRLQRGLTNAVIQDISFSADSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKNGGLDIINNQAVRWPHSSALEICKPQSLCAAGPPITLSVVSRIRNGSNGWRSTVTGAAAAATNRMSSLSGAIASSFRNFKDSSTLYVNGNYSKEKHHLLVFSPTSSMIQYALQTINSQGSGVVSGVTPAYESAPLTDARVVVEPIKKWNISLAYSWREGEDTIDIYGENGVSDSNKLYSEEVKKDNIISPKMKNVTVKWNPCSEKEHQFYISEAELQMHQAKTPLWGKTGIYFHSVGKEATLMMDEEAALGGEFEIEKIPTRVIQARSKDLVPIFDYIQTSKFQQIRTLVNNKLNEQLLHQSSFEKGRISPRGILGFPDCINNSGETIAEFKSGIEGNERGDSLIPAETKAFVNNNNTLKPNTWPEIVNNRRENLNMDVHQMFVNSDRKGLKLENHCKEKGDEFE* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2216 937 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 45 904 IPR045142 GO:0006914
Gso6g2216 937 SMART WD40_4 471 512 IPR001680 GO:0005515
Gso6g2216 937 SMART WD40_4 415 455 IPR001680 GO:0005515
Gso6g2216 937 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 45 904 - -
Gso6g2216 937 Pfam Breast carcinoma amplified sequence 3 564 805 IPR022175 -
Gso6g2216 937 Gene3D - 115 516 IPR015943 GO:0005515
Gso6g2216 937 SUPERFAMILY WD40 repeat-like 136 515 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2216 Gso-Chr6 42803127 42808884 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2216 - - gmx:100778343 1757.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2216 6 42803127 42808884 Gso6g2216 6 42803127 42808884 ECH
Gso12g1128 12 15967650 15974950 Gso6g2216 6 42803127 42808884 GST
Gso12g1812 12 41843271 41849172 Gso6g2216 6 42803127 42808884 PCT
Gso11g3051 11 46344968 46351768 Gso6g2216 6 42803127 42808884 PCT
Gso6g2216 6 42803127 42808884 Gso12g1812 12 41843271 41849172 PCT
Gso6g2216 6 42803127 42808884 Gso11g3051 11 46344968 46351768 PCT